| Age | Commit message (Collapse) | Author | |
|---|---|---|---|
| 2024-08-17 | Add -debug-dump CLI flag for dumping data to files. | Artyom Bologov | |
| 2020-09-28 | Show computed variance | Pjotr Prins | |
| 2020-09-28 | Show precision | Pjotr Prins | |
| 2020-09-28 | Display mean | Pjotr Prins | |
| 2018-09-27 | Using -no-check by default now | Pjotr Prins | |
| 2018-09-07 | Matrices positive definite issues | Pjotr Prins | |
| 2018-09-06 | Show warning on some unused matrices | Pjotr Prins | |
| 2018-09-06 | More debugging and a performance check | Pjotr Prins | |
| 2018-09-06 | More debugging info and raise SIGINT instead of exit | Pjotr Prins | |
| 2018-09-06 | Further debugging | Pjotr Prins | |
| 2018-08-31 | Continue debugging calcpab | Pjotr Prins | |
| 2018-08-30 | Debugging calcPab | Pjotr Prins | |
| 2018-08-26 | More value checking and bounds checking | Pjotr Prins | |
| 2018-08-26 | debug: feenableexcept can be disabled using legacy mode | Pjotr Prins | |
| 2018-08-25 | debug: feenableexcept for MacOS and limit to Intel x64 machines | Pjotr Prins | |
| 2018-07-27 | Add floating point hardware checking for Intel on GNU compilers | Pjotr Prins | |
| When using the -check function (the default) it is enabled for Kinship computation and LM/LMM up to individual SNP computation. This means there can no longer be NaN values for matrices that are reused for every SNP, but it is possible to have NaN for individual SNPs. Fixes #161 | |||
| 2018-01-27 | Extra error info on strtok parsing failure - should help support | Pjotr Prins | |
| 2018-01-26 | Always check input data for strtok - unless -no-check is used | Pjotr Prins | |
| 2017-12-12 | Updated copyright info | Pjotr Prins | |
| 2017-12-07 | Some more overflow checks | Pjotr Prins | |
| 2017-12-06 | Some cleanup on matrix checking | Pjotr Prins | |
| 2017-11-22 | Remove compiler warnings and add check is_nan | Pjotr Prins | |
| 2017-11-15 | Nans: introducing checking on mem free | Pjotr Prins | |
| 2017-11-09 | Disabled debug output when not using -debug | Pjotr Prins | |
| 2017-10-23 | Travis-ci: | Pjotr Prins | |
| - Disabled gcc-6 since we develop with later tools anyway - Turned the release test into a simple integration test - Adding MacOSX on Travis-ci Tests: Adding tests for Plink w. LOCO Safety: Introduce strtok_safe to get rid of segfaults | |||
| 2017-10-20 | NaN check only when -debug is used | Pjotr Prins | |
| 2017-10-18 | Tests still pass with safe_alloc (which sets the buffers to NaNs on allocation) | Pjotr Prins | |
| 2017-10-13 | Refactored debug settings | Pjotr Prins | |
| Replaced eigenlib_dgemm with fast_dgemm - 10-30% speed gain for GEMMA | |||
| 2017-10-13 | OpenBlas: preparing for dgemm use | Pjotr Prins | |
| 2017-10-13 | debug message: minor change | Pjotr Prins | |
| 2017-10-13 | Fixed warning with assignment in if statement. | Peter Carbonetto | |
| 2017-10-13 | Removing warnings on debug.h assignment | Pjotr Prins | |
| 2017-08-22 | Fixes matrix checks - looking saner now | Pjotr Prins | |
| - Matrix checks as described in https://github.com/genetics-statistics/GEMMA/issues/72 - introduces -strict switch which will exit on certain conditions - zero small eigenvalues in EigenDecomp_Zeroed which also checks for negative values - commented out float versions of functions in lapack.cpp (pre-removal) - reverted on disabled regression tests (GEMMA shows its previous behaviour now) | |||
| 2017-08-20 | Added checks for K | Pjotr Prins | |
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index : pangemma | |
| PanGEMMA: Genome-wide Efficient Mixed Model Association |
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