aboutsummaryrefslogtreecommitdiff
AgeCommit message (Expand)Author
2017-10-14Travis fixPjotr Prins
2017-10-14More disabling of eigenlib (faster compilation) and avoid OPENBLAS_CONST whic...Pjotr Prins
2017-10-13Refactored debug settings...Replaced eigenlib_dgemm with fast_dgemm - 10-30% speed gain for GEMMA Pjotr Prins
2017-10-13Openblas specific include filePjotr Prins
2017-10-13Replacing first dgemm - tests failPjotr Prins
2017-10-13OpenBlas: preparing for dgemm usePjotr Prins
2017-10-13Fix header for not showing sePjotr Prins
2017-10-13Disable se for lmm=2, see https://github.com/genetics-statistics/GEMMA/issues/81Pjotr Prins
2017-10-13Fixed mean and iterations in Plink - now this worksPjotr Prins
2017-10-13Progressbar updatePjotr Prins
2017-10-13Consolidate into ProgressBar into one function and related updatesPjotr Prins
2017-10-13Fix embarrassing bug that broke BIMBAM for larger datasets - found it when po...Pjotr Prins
2017-10-13debug message: minor changePjotr Prins
2017-10-13Updated/revised Makefile for MacOSX.Peter Carbonetto
2017-10-13Bumped up version.Peter Carbonetto
2017-10-13Change ulong type to long.Peter Carbonetto
2017-10-13Fixed warning with assignment in if statement.Peter Carbonetto
2017-10-13Make sure __ASSERT_VOID_CAST worksPjotr Prins
2017-10-13Removing warnings on debug.h assignmentPjotr Prins
2017-10-06LMM: small cleanup and default to NaN initializationPjotr Prins
2017-10-06LMM: BIMBAM and PLINK share same LMM code - test passPjotr Prins
2017-10-06LMM: lifter genotype parsing for BIMBAM. All tests pass.Pjotr Prins
2017-10-06LMM: lifter line noPjotr Prins
2017-10-06LMM: lifted out file accessPjotr Prins
2017-10-06Oops: fixed logic problem after removing Oxford dataPjotr Prins
2017-10-06Makefile: Some notes on test commandsPjotr Prins
2017-10-05Removed Oxford format as per https://github.com/genetics-statistics/GEMMA/iss...Pjotr Prins
2017-10-05LMM: skip beta (again) with LRTPjotr Prins
2017-10-05Addresses... https://github.com/genetics-statistics/GEMMA/issues/81 Pjotr Prins
2017-10-05Added simulated phenotypes for HLC....-n 1 2 3 13 are independent. The others depend on 3 and 13. Pjotr Prins
2017-10-05Adding debug statements on entering functions and added test for issue 58Pjotr Prins
2017-10-05Added a few checks and infoPjotr Prins
2017-09-14Merge pull request #85 from prasunanand/gsl_version_patch...check GSL_MINOR_VERSION while compilingPjotr Prins
2017-09-14check GSL_MINOR_VERSION while compilingprasun
2017-09-12Merge pull request #83 from genenetwork/master...Show GSL and Eigen versions in .log outputPjotr Prins
2017-09-12Show GSL and Eigen versions in .log outputPjotr Prins
2017-08-28param.cpp: Set error on errorPjotr Prins
2017-08-27-a...ReadFile_geno: stop warnings after 10x Pjotr Prins
2017-08-27Makefile: clean up of the main Makefile and changed build instructions... to align with normal build systems * Debug mode is now the default (use DEBUG= to disable) * Dynamic linking is now the default (use FORCE_STATIC=1 for static) * Removed references to 32-bit compilation (default is $arch) Pjotr Prins
2017-08-27Removed large sections of commented out codePjotr Prins
2017-08-27Merge pull request #79 from genenetwork/issue78...Issue78Pjotr Prins
2017-08-26LULndet: remove bad enforcePjotr Prins
2017-08-26Debug: only output check on -debugPjotr Prins
2017-08-26Tests and enforces added related to https://github.com/genetics-statistics/GE...Pjotr Prins
2017-08-26Rename unittests binary to unittests-gemmaPjotr Prins
2017-08-22Merge pull request #76 from genenetwork/merge-checkK...Fixes matrix checks---looking saner now.Peter Carbonetto
2017-08-22Fix typo intecept -> interceptPjotr Prins
2017-08-22EigenDecomp: also show warning on multiple zero valuesPjotr Prins
2017-08-22Fixes matrix checks - looking saner now...- Matrix checks as described in https://github.com/genetics-statistics/GEMMA/issues/72 - introduces -strict switch which will exit on certain conditions - zero small eigenvalues in EigenDecomp_Zeroed which also checks for negative values - commented out float versions of functions in lapack.cpp (pre-removal) - reverted on disabled regression tests (GEMMA shows its previous behaviour now) Pjotr Prins
2017-08-21Added explanation of "beta estimates" in log.txt outputs.Peter Carbonetto
generated by cgit v1.2.3 (git 2.46.2) at 2025-01-31 16:08:40 +0000