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2017-10-13Fix header for not showing sePjotr Prins
2017-10-13Disable se for lmm=2, see https://github.com/genetics-statistics/GEMMA/issues/81Pjotr Prins
2017-10-13Fixed mean and iterations in Plink - now this worksPjotr Prins
2017-10-13Progressbar updatePjotr Prins
2017-10-13Consolidate into ProgressBar into one function and related updatesPjotr Prins
2017-10-13Fix embarrassing bug that broke BIMBAM for larger datasets - found it when ↵Pjotr Prins
porting Plink to the new Analyze function
2017-10-13debug message: minor changePjotr Prins
2017-10-13Updated/revised Makefile for MacOSX.Peter Carbonetto
2017-10-13Bumped up version.Peter Carbonetto
2017-10-13Change ulong type to long.Peter Carbonetto
2017-10-13Fixed warning with assignment in if statement.Peter Carbonetto
2017-10-13Make sure __ASSERT_VOID_CAST worksPjotr Prins
2017-10-13Removing warnings on debug.h assignmentPjotr Prins
2017-10-11Fix embarrassing bug that broke BIMBAM for larger datasets - found it when ↵Pjotr Prins
porting Plink to the new Analyze function
2017-10-11debug message: minor changePjotr Prins
2017-10-10Updated/revised Makefile for MacOSX.Peter Carbonetto
2017-10-10Bumped up version.Peter Carbonetto
2017-10-10Change ulong type to long.Peter Carbonetto
2017-10-10Fixed warning with assignment in if statement.Peter Carbonetto
2017-10-10Merge pull request #99 from genenetwork/masterPeter Carbonetto
Fix compiler warnings on MacOSX.
2017-10-10Make sure __ASSERT_VOID_CAST worksPjotr Prins
2017-10-10Removing warnings on debug.h assignmentPjotr Prins
2017-10-09Merge pull request #92 from genenetwork/gemma-masterPeter Carbonetto
Fixed for a number of outstanding issues.
2017-10-06LMM: small cleanup and default to NaN initializationPjotr Prins
2017-10-06LMM: BIMBAM and PLINK share same LMM code - test passPjotr Prins
2017-10-06LMM: lifter genotype parsing for BIMBAM. All tests pass.Pjotr Prins
2017-10-06LMM: lifter line noPjotr Prins
2017-10-06LMM: lifted out file accessPjotr Prins
2017-10-06Oops: fixed logic problem after removing Oxford dataPjotr Prins
2017-10-06Makefile: Some notes on test commandsPjotr Prins
2017-10-05Removed Oxford format as per ↵Pjotr Prins
https://github.com/genetics-statistics/GEMMA/issues/46
2017-10-05LMM: skip beta (again) with LRTPjotr Prins
2017-10-05AddressesPjotr Prins
https://github.com/genetics-statistics/GEMMA/issues/81
2017-10-05Added simulated phenotypes for HLC.Pjotr Prins
-n 1 2 3 13 are independent. The others depend on 3 and 13.
2017-10-05Adding debug statements on entering functions and added test for issue 58Pjotr Prins
2017-10-05Added a few checks and infoPjotr Prins
2017-09-14Merge pull request #85 from prasunanand/gsl_version_patchPjotr Prins
check GSL_MINOR_VERSION while compiling
2017-09-14check GSL_MINOR_VERSION while compilingprasun
2017-09-12Merge pull request #83 from genenetwork/masterPjotr Prins
Show GSL and Eigen versions in .log output
2017-09-12Show GSL and Eigen versions in .log outputPjotr Prins
2017-08-28param.cpp: Set error on errorPjotr Prins
2017-08-27-aPjotr Prins
ReadFile_geno: stop warnings after 10x
2017-08-27Makefile: clean up of the main Makefile and changed build instructionsPjotr Prins
to align with normal build systems * Debug mode is now the default (use DEBUG= to disable) * Dynamic linking is now the default (use FORCE_STATIC=1 for static) * Removed references to 32-bit compilation (default is $arch)
2017-08-27Removed large sections of commented out codePjotr Prins
2017-08-27Merge pull request #79 from genenetwork/issue78Pjotr Prins
Issue78
2017-08-26LULndet: remove bad enforcePjotr Prins
2017-08-26Debug: only output check on -debugPjotr Prins
2017-08-26Tests and enforces added related to ↵Pjotr Prins
https://github.com/genetics-statistics/GEMMA/issues/78
2017-08-26Rename unittests binary to unittests-gemmaPjotr Prins
2017-08-22Merge pull request #76 from genenetwork/merge-checkKPeter Carbonetto
Fixes matrix checks---looking saner now.
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