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AgeCommit message (Expand)Author
2018-09-18Performance metricsPjotr Prins
2018-09-18Disable nan checking with no-checkPjotr Prins
2018-09-18Added profiling and build instructionsPjotr Prins
2018-09-15Using Guix container to build with gcc and clangPjotr Prins
2018-09-15Remove noisy batch_compute messagePjotr Prins
2018-09-15README: updatePjotr Prins
2018-09-07Matrices positive definite issuesPjotr Prins
2018-09-06Show warning on some unused matricesPjotr Prins
2018-09-06Fix travis errorPjotr Prins
2018-09-06Sometimes a value gets negative zero causing a NaN on the sqrt.•••Closes #61 Pjotr Prins
2018-09-06More debugging and a performance checkPjotr Prins
2018-09-06More debugging info and raise SIGINT instead of exitPjotr Prins
2018-09-06Further debuggingPjotr Prins
2018-09-01CalcPab notesPjotr Prins
2018-08-31More testingPjotr Prins
2018-08-31Improving readabilityPjotr Prins
2018-08-31Continue debugging calcpabPjotr Prins
2018-08-30Debugging calcPabPjotr Prins
2018-08-26More value checking and bounds checkingPjotr Prins
2018-08-26Make sure tau_inv is initialized outside loop - gets rid of compiler warningPjotr Prins
2018-08-26debug: feenableexcept can be disabled using legacy modePjotr Prins
2018-08-25debug: feenableexcept for MacOS and limit to Intel x64 machinesPjotr Prins
2018-08-25Number format checking in strict mode. Also fixes #149Pjotr Prins
2018-08-25Added remarksPjotr Prins
2018-08-25segfpe handlingPjotr Prins
2018-08-25Added a test for LMPjotr Prins
2018-08-25eigenvalues: some error checking addedPjotr Prins
2018-07-27Add floating point hardware checking for Intel on GNU compilers•••When using the -check function (the default) it is enabled for Kinship computation and LM/LMM up to individual SNP computation. This means there can no longer be NaN values for matrices that are reused for every SNP, but it is possible to have NaN for individual SNPs. Fixes #161 Pjotr Prins
2018-07-26Unittest: added test for forcing and catching floating point errors (this works)Pjotr Prins
2018-07-14Guix: add more build information to the final binaryPjotr Prins
2018-07-14- Guix Makefile added RPATH•••- Added performance metrics in ./test/performance Pjotr Prins
2018-07-14Guix: added GUIX flag to automate make settings. Added DAG of dependenciesPjotr Prins
2018-07-13GNU Guix build systemPjotr Prins
2018-06-29Fix conflictPjotr Prins
2018-06-29Merge branch 'master' of github.com:genetics-statistics/GEMMAPjotr Prins
2018-06-15explain how to deal with population stratification in the reference panelxiangzhou
2018-06-10Merge pull request #151 from Dybian/patch-1.•••Typo: sepcified -> specified.Peter Carbonetto
2018-06-05Typo: sepcified -> specifiedDylan Aïssi
2018-05-02doc: data-mungingPjotr Prins
2018-03-06Added link to RCC workshop.Peter Carbonetto
2018-03-01Merge pull request #139 from DannyArends/minGW_R•••Added support to build GEMMA using the Rtool chain in Windows (x64).Peter Carbonetto
2018-03-01Early morning extra fwd slash failure, fixed in this commitDannyArends
2018-03-01Trying to fix the -isystem/ failure of travisDannyArends
2018-02-28Compilation instruction for GEMMA using the R-toolchain under windowsDannyArends
2018-02-28Makefile changes, to compile under windowsDannyArends
2018-02-28MinGW mkdir function doesn't allow for S_IRWXU, paramsDannyArends
2018-02-28renamed import io.h to gemma_io.hDannyArends
2018-02-28io.h is a std lib function for MinGW64, renamed it to gemma_io.hDannyArends
2018-02-28Windows compilation paths, and restructuring the -isystemDannyArends
2018-02-28OS detection, and version script generator selection via VGENDannyArends
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