pangemma - PanGEMMA: Genome-wide Efficient Mixed Model Association

Age	Commit message (Collapse)	Author
2017-10-13	Fixed warning with assignment in if statement.	Peter Carbonetto

2017-10-13	Make sure __ASSERT_VOID_CAST works	Pjotr Prins

2017-10-13	Removing warnings on debug.h assignment	Pjotr Prins

2017-10-06	LMM: small cleanup and default to NaN initialization	Pjotr Prins

2017-10-06	LMM: BIMBAM and PLINK share same LMM code - test pass	Pjotr Prins

2017-10-06	LMM: lifter genotype parsing for BIMBAM. All tests pass.	Pjotr Prins

2017-10-06	LMM: lifter line no	Pjotr Prins

2017-10-06	LMM: lifted out file access	Pjotr Prins

2017-10-06	Oops: fixed logic problem after removing Oxford data	Pjotr Prins

2017-10-06	Makefile: Some notes on test commands	Pjotr Prins

2017-10-05	Removed Oxford format as per ↵	Pjotr Prins
	https://github.com/genetics-statistics/GEMMA/issues/46
2017-10-05	LMM: skip beta (again) with LRT	Pjotr Prins

2017-10-05	Addresses	Pjotr Prins
	https://github.com/genetics-statistics/GEMMA/issues/81
2017-10-05	Added simulated phenotypes for HLC.	Pjotr Prins
	-n 1 2 3 13 are independent. The others depend on 3 and 13.
2017-10-05	Adding debug statements on entering functions and added test for issue 58	Pjotr Prins

2017-10-05	Added a few checks and info	Pjotr Prins

2017-09-14	Merge pull request #85 from prasunanand/gsl_version_patch	Pjotr Prins
	check GSL_MINOR_VERSION while compiling
2017-09-14	check GSL_MINOR_VERSION while compiling	prasun

2017-09-12	Merge pull request #83 from genenetwork/master	Pjotr Prins
	Show GSL and Eigen versions in .log output
2017-09-12	Show GSL and Eigen versions in .log output	Pjotr Prins

2017-08-28	param.cpp: Set error on error	Pjotr Prins

2017-08-27	-a	Pjotr Prins
	ReadFile_geno: stop warnings after 10x
2017-08-27	Makefile: clean up of the main Makefile and changed build instructions	Pjotr Prins
	to align with normal build systems * Debug mode is now the default (use DEBUG= to disable) * Dynamic linking is now the default (use FORCE_STATIC=1 for static) * Removed references to 32-bit compilation (default is $arch)
2017-08-27	Removed large sections of commented out code	Pjotr Prins

2017-08-27	Merge pull request #79 from genenetwork/issue78	Pjotr Prins
	Issue78
2017-08-26	LULndet: remove bad enforce	Pjotr Prins

2017-08-26	Debug: only output check on -debug	Pjotr Prins

2017-08-26	Tests and enforces added related to ↵	Pjotr Prins
	https://github.com/genetics-statistics/GEMMA/issues/78
2017-08-26	Rename unittests binary to unittests-gemma	Pjotr Prins

2017-08-22	Merge pull request #76 from genenetwork/merge-checkK	Peter Carbonetto
	Fixes matrix checks---looking saner now.
2017-08-22	Fix typo intecept -> intercept	Pjotr Prins

2017-08-22	EigenDecomp: also show warning on multiple zero values	Pjotr Prins

2017-08-22	Fixes matrix checks - looking saner now	Pjotr Prins
	- Matrix checks as described in https://github.com/genetics-statistics/GEMMA/issues/72 - introduces -strict switch which will exit on certain conditions - zero small eigenvalues in EigenDecomp_Zeroed which also checks for negative values - commented out float versions of functions in lapack.cpp (pre-removal) - reverted on disabled regression tests (GEMMA shows its previous behaviour now)
2017-08-21	Added explanation of "beta estimates" in log.txt outputs.	Peter Carbonetto

2017-08-21	Merge branch 'master' of github.com:xiangzhou/GEMMA	Peter Carbonetto

2017-08-21	Added more detailed description of -widv option following Xiang's ↵	Peter Carbonetto
	description given in Issue #59.
2017-08-21	Bumped up version for Makefile.macosx.	Peter Carbonetto

2017-08-21	Bumped up version.	Peter Carbonetto

2017-08-21	Merge pull request #73 from genenetwork/merge-checkK	Peter Carbonetto
	Check K and added unit test framework.
2017-08-20	Move shunit2 into ./contrib and add catch-1.8.7	Pjotr Prins

2017-08-20	Unit tests	Pjotr Prins

2017-08-20	Support files	Pjotr Prins

2017-08-20	Added checks for K	Pjotr Prins

2017-08-15	Merge pull request #70 from genenetwork/issue14	Peter Carbonetto
	Fixes output file with kinship has extra column.
2017-08-15	Fixes output file with kinship has extra column	Pjotr Prins
	https://github.com/genetics-statistics/GEMMA/issues/14
2017-08-14	Merge pull request #69 from genenetwork/issue58.	Peter Carbonetto
	Tests for https://github.com/genetics-statistics/GEMMA/issues/58.
2017-08-14	Merge pull request #68 from genenetwork/issue26.	Peter Carbonetto
	Tests and fixes https://github.com/genetics-statistics/GEMMA/issues/26.
2017-08-14	Issue 58, add tests for GSLv2 NaN's showing up with covariates	Pjotr Prins
	https://github.com/genetics-statistics/GEMMA/issues/58
2017-08-14	Tests and fixes https://github.com/genetics-statistics/GEMMA/issues/26	Pjotr Prins

2017-08-13	Merge pull request #67 from genenetwork/travis	Peter Carbonetto
	Travis.