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PanGEMMA: Genome-wide Efficient Mixed Model Association
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2025-12-09
Allow skipping out of loop with LOCO
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master
Pjotr Prins
2025-12-09
Compute K for Gb
Pjotr Prins
2025-12-07
Support loco for mdb kinship compute
Pjotr Prins
2025-12-06
LOCO support works for mdb
Pjotr Prins
2025-12-06
Adding loco support for mdb
Pjotr Prins
2025-12-06
For LOCO we wont use gwassnps
Pjotr Prins
2025-12-05
Add support for Gb genotype byte representation
Pjotr Prins
2025-12-05
Output is on par with earlier gemma - only allele values are missing
Pjotr Prins
2025-12-05
Rename to MarkerInfo
Pjotr Prins
2025-12-05
Replace tuple with aggregate
Pjotr Prins
2025-12-05
Compute maf again
Pjotr Prins
2025-12-04
Output has same values as original!
Pjotr Prins
2025-12-04
Pass in markerinfo
Pjotr Prins
2025-12-04
Unpack marker
Pjotr Prins
2025-12-04
keys
Pjotr Prins
2025-12-03
Working on output
Pjotr Prins
2025-12-03
Writing output local to function
Pjotr Prins
2025-12-03
Pass in snp info
Pjotr Prins
2025-12-03
Unpack key to get chr,pos,marker
Pjotr Prins
2025-12-03
Some output
Pjotr Prins
2025-12-03
guix.scm edits
Pjotr Prins
2025-12-03
Trying to optimize mdb read-ahead
Pjotr Prins
2025-12-03
Compiler warnings and some output for K
Pjotr Prins
2025-12-02
Started generating output
Pjotr Prins
2025-12-02
All SNPs computed
Pjotr Prins
2025-12-01
Code loads markers - getting ready to compute
Pjotr Prins
2025-12-01
Copy function so I can modify
Pjotr Prins
2025-12-01
Set up lmdb reading of geno file again
Pjotr Prins
2025-12-01
Refactoring
Pjotr Prins
2025-12-01
Almost ready to run GWA
Pjotr Prins
2025-12-01
Refactoring
Pjotr Prins
2025-12-01
mdb gwa
Pjotr Prins
2025-12-01
Wiring in mdb GWA
Pjotr Prins
2025-12-01
Added test
Pjotr Prins
2025-12-01
Toyed a bit with SNP filtering. I think my unfiltered approach for computing ...
Pjotr Prins
2025-11-30
Extracting MAF computation
Pjotr Prins
2025-11-30
Write out K
Pjotr Prins
2025-11-30
K: reads geno mdb
Pjotr Prins
2025-11-30
Fetch ni_total from lmdb
Pjotr Prins
2025-11-29
Introduce lmdb++
Pjotr Prins
2025-11-28
Toying with lmdbi
Pjotr Prins
2025-11-28
Simplify a bit and make guix.scm work without running out of RAM
Pjotr Prins
2025-11-28
working on mdb
Pjotr Prins
2025-11-28
Prepare for using mdb geno in a test
Pjotr Prins
2025-11-28
Improving test
Pjotr Prins
2025-11-27
Test naming
Pjotr Prins
2025-11-27
Prepare for split testing
Pjotr Prins
2025-11-27
test: check the output numbers
Pjotr Prins
2025-11-27
Introduce first test
Pjotr Prins
2025-11-27
Update copyrights
Pjotr Prins
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