1 files changed, 0 insertions, 82 deletions
diff --git a/vc.h b/vc.h
deleted file mode 100644
index f34d72e..0000000
--- a/vc.h
+++ /dev/null
@@ -1,82 +0,0 @@
-/*
-	Genome-wide Efficient Mixed Model Association (GEMMA)
-    Copyright (C) 2011  Xiang Zhou
-
-    This program is free software: you can redistribute it and/or modify
-    it under the terms of the GNU General Public License as published by
-    the Free Software Foundation, either version 3 of the License, or
-    (at your option) any later version.
-
-    This program is distributed in the hope that it will be useful,
-    but WITHOUT ANY WARRANTY; without even the implied warranty of
-    MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
-    GNU General Public License for more details.
-
-    You should have received a copy of the GNU General Public License
-    along with this program.  If not, see <http://www.gnu.org/licenses/>.
-*/
-
-#ifndef __VC_H__                
-#define __VC_H__
-
-#include "gsl/gsl_vector.h"
-#include "gsl/gsl_matrix.h"
-
-
-#ifdef FORCE_FLOAT
-#include "param_float.h"
-#include "io_float.h"
-#else
-#include "param.h"
-#include "io.h"
-#endif
-
-using namespace std;
-
-
-
-class VC_PARAM
-{
-
-public:	
-	const gsl_matrix *K;
-	const gsl_matrix *W;
-	const gsl_vector *y;
-	gsl_matrix *P;
-	gsl_vector *Py;
-	gsl_matrix *KPy_mat;
-	gsl_matrix *PKPy_mat;
-	gsl_matrix *Hessian;
-};
-
-
-
-
-class VC {
-
-public:
-	// IO related parameters
-	string file_out;
-	string path_out;
-
-	vector<double> v_sigma2;
-	vector<double> v_se_sigma2;
-	vector<double> v_pve;
-	vector<double> v_se_pve;
-	vector<double> v_traceG;
-	vector<double> v_beta;
-	vector<double> v_se_beta;
-
-	double time_UtX;
-	double time_opt;
-	
-	// Main functions
-	void CopyFromParam (PARAM &cPar);
-	void CopyToParam (PARAM &cPar);
-	void CalcVChe (const gsl_matrix *K, const gsl_matrix *W, const gsl_vector *y);
-	void CalcVCreml (const gsl_matrix *K, const gsl_matrix *W, const gsl_vector *y);
-};
-
-#endif
-
-