diff options
Diffstat (limited to 'test')
| -rwxr-xr-x | test/dev_test_suite.sh | 17 |
1 files changed, 17 insertions, 0 deletions
diff --git a/test/dev_test_suite.sh b/test/dev_test_suite.sh index 284c9aa..0966cba 100755 --- a/test/dev_test_suite.sh +++ b/test/dev_test_suite.sh @@ -32,6 +32,23 @@ testBXDStandardRelatednessMatrixK() { assertEquals "-116.11" `perl -nle 'foreach $x (split(/\s+/,$_)) { $sum += sprintf("%.2f",(substr($x,,0,6))) } END { printf "%.2f",$sum }' $outfn` } +testBXDLMLikelihoodRatio() { + outn=BXD_LM_LR + $gemma -g ../example/BXD_geno.txt.gz \ + -p ../example/BXD_pheno.txt \ + -c ../example/BXD_covariates2.txt \ + -a ../example/BXD_snps.txt \ + -k ./output/BXD.cXX.txt \ + -lm 4 -maf 0.1 \ + -debug \ + -o $outn + assertEquals 0 $? + + outfn=output/$outn.assoc.txt + assertEquals "95134" `wc -w < $outfn` + assertEquals "3089042886.28" `perl -nle 'foreach $x (split(/\s+/,$_)) { $sum += sprintf("%.2f",(substr($x,,0,6))) } END { printf "%.2f",$sum }' $outfn` +} + testBXDLMMLikelihoodRatio() { outn=BXD_LMM_LR $gemma -g ../example/BXD_geno.txt.gz \ |