diff options
Diffstat (limited to 'test')
| -rwxr-xr-x | test/test-mdb-integration.scm | 24 | ||||
| -rwxr-xr-x[-rw-r--r--] | test/test-uvlmm-integration.scm | 12 |
2 files changed, 24 insertions, 12 deletions
diff --git a/test/test-mdb-integration.scm b/test/test-mdb-integration.scm new file mode 100755 index 0000000..69faea5 --- /dev/null +++ b/test/test-mdb-integration.scm @@ -0,0 +1,24 @@ +#!/bin/sh +# -*- mode: scheme; -*- +exec guile --debug -s "$0" "$@" +!# + +(define-module (test-runner) + #:use-module (ice-9 match) + #:use-module (srfi srfi-1) ; for last + #:use-module (srfi srfi-13) + #:use-module (srfi srfi-64) ; for tests + #:use-module (ice-9 rdelim) + ) + +(define kinship-fn "./output/mouse_hs1940.cXX.txt") +(define gwa-fn "./output/mouse_hs1940.assoc.txt") + +(test-begin "uvlmm-mdb-kinship-run") + +(when (file-exists? kinship-fn) + (delete-file kinship-fn)) +(let [(err (system "./build/bin/Debug/gemma -g ./example/mouse_hs1940.geno.mdb -p ./example/mouse_hs1940.pheno.txt -gk -o mouse_hs1940 -debug"))] + (test-eqv 0 err)) + +(test-end "uvlmm-mdb-kinship-run") diff --git a/test/test-uvlmm-integration.scm b/test/test-uvlmm-integration.scm index 10af32f..91eb14a 100644..100755 --- a/test/test-uvlmm-integration.scm +++ b/test/test-uvlmm-integration.scm @@ -14,16 +14,6 @@ exec guile --debug -s "$0" "$@" (define kinship-fn "./output/mouse_hs1940.cXX.txt") (define gwa-fn "./output/mouse_hs1940.assoc.txt") -(test-begin "uvlmm-mdb-kinship-run") - -(when (file-exists? kinship-fn) - (delete-file kinship-fn)) -(let [(err (system "./build/bin/Debug/gemma -g ./example/mouse_hs1940.geno.mdb -p ./example/mouse_hs1940.pheno.txt -gk -o mouse_hs1940 -debug"))] - (test-eqv 0 err)) - -(test-end "uvlmm-mdb-kinship-run") - -#! (test-begin "uvlmm-bimbam-kinship-run") (when (file-exists? kinship-fn) @@ -60,5 +50,3 @@ exec guile --debug -s "$0" "$@" (+ sum (truncate (* 1000 value)))))))))) (test-end "uvlmm-bimbam-gwa-run") - -!# |
