diff options
Diffstat (limited to 'test/performance')
| -rw-r--r-- | test/performance/releases.org | 6 |
1 files changed, 4 insertions, 2 deletions
diff --git a/test/performance/releases.org b/test/performance/releases.org index 5ecaaac..b9c451d 100644 --- a/test/performance/releases.org +++ b/test/performance/releases.org @@ -19,7 +19,9 @@ that may not look like much, but we are only starting! We are facing a time regression. -premake5 gmake && make verbose=1 config=release -j 8 gemma && time LD_LIBRARY_PATH=$GUIX_ENVIRONMENT/lib ./build/bin/Release/gemma -g ./example/mouse_hs1940.geno.txt.gz -p ./example/mouse_hs1940.pheno.txt -n 1 -a ./example/mouse_hs1940.anno.txt -k ./output/result.cXX.txt -lmm -no-check +#+begin_src sh +premake5 gmake && make verbose=1 config=release -j 8 gemma && time LD_LIBRARY_PATH=$GUIX_ENVIRONMENT/lib ./build/bin/Release/gemma -g ./example/mouse_hs1940.geno.txt.mdb -p ./example/mouse_hs1940.pheno.txt -n 1 -a ./example/mouse_hs1940.anno.txt -k ./output/result.cXX.txt -lmm -no-check +#+end_src sh With openblas 0.3.21 we go a bit faster. Still 10% behind though, there is room for tweaking. It may actually be a new SSD. I want to run some bigger files first. @@ -66,7 +68,7 @@ The output looks the same. Good. So far the first difference is a much later ope When compiled with the profiler library prefix the gemma run with #+begin_src sh -premake5 gmake2 && make verbose=1 config=debug -j 8 gemma && time CPUPROFILE=gemma.prof LD_LIBRARY_PATH=$GUIX_ENVIRONMENT/lib ./build/bin/Debug/gemma -g ./example/mouse_hs1940.geno.txt.gz -p ./example/mouse_hs1940.pheno.txt -n 1 -a ./example/mouse_hs1940.anno.txt -k ./output/result.cXX.txt -lmm -no-check -debug +premake5 gmake && make verbose=1 config=debug -j 8 gemma && time CPUPROFILE=gemma.prof LD_LIBRARY_PATH=$GUIX_ENVIRONMENT/lib ./build/bin/Debug/gemma -g ./example/mouse_hs1940.geno.txt.gz -p ./example/mouse_hs1940.pheno.txt -n 1 -a ./example/mouse_hs1940.anno.txt -k ./output/result.cXX.txt -lmm -no-check -debug CPUPROFILE=gemma.prof pprof --text build/bin/Debug/gemma gemma.prof |