1 files changed, 8 insertions, 10 deletions
diff --git a/src/param.h b/src/param.h
index ff279bd..c4316bb 100644
--- a/src/param.h
+++ b/src/param.h
@@ -26,7 +26,8 @@
 #include <set>
 #include <vector>
 
-#define K_BATCH_SIZE 10000 // #snps used for batched K
+#define K_BATCH_SIZE 20000 // #snps used for batched K
+#define DEFAULT_PACE 1000  // for display only
 
 using namespace std;
 
@@ -115,16 +116,16 @@ public:
 class PARAM {
 public:
   // IO-related parameters
-  bool mode_check = true;   // run data checks (slower)
-  bool mode_strict = false; // exit on some data checks
-  bool mode_silence;
-  bool mode_debug = false;
-  uint issue; // enable tests for issue on github tracker
+  // bool mode_check = true;   // run data checks (slower)
+  // bool mode_strict = false; // exit on some data checks
+  // bool mode_silence;
+  // bool mode_debug = false;
+  // uint issue; // enable tests for issue on github tracker
 
   uint a_mode; // Analysis mode, 1/2/3/4 for Frequentist tests
   int k_mode; // Kinship read mode: 1: n by n matrix, 2: id/id/k_value;
   vector<size_t> p_column; // Which phenotype column needs analysis.
-  size_t d_pace;           // Display pace
+  size_t d_pace = DEFAULT_PACE;   // Display pace (-pace switch)
 
   string file_bfile, file_mbfile;
   string file_geno, file_mgeno;
@@ -155,9 +156,6 @@ public:
   string file_ksnps;   // File SNPs for computing K
   string file_gwasnps; // File SNPs for computing GWAS
 
-  // WJA added.
-  string file_oxford;
-
   // QC-related parameters.
   double miss_level;
   double maf_level;