diff options
Diffstat (limited to 'src/lmm.h')
| -rw-r--r-- | src/lmm.h | 6 |
1 files changed, 5 insertions, 1 deletions
@@ -26,6 +26,8 @@ using namespace std; +#define LMM_BATCH_SIZE 10000 // used for batch processing + class FUNC_PARAM { public: @@ -78,6 +80,7 @@ public: vector<int> indicator_snp; vector<SNPINFO> snpInfo; // Record SNP information. + set<string> setGWASnps; // Record SNP information. // Not included in PARAM. vector<SUMSTAT> sumStat; // Output SNPSummary Data. @@ -97,7 +100,8 @@ public: const gsl_matrix *W, const gsl_vector *y); void AnalyzeBimbam(const gsl_matrix *U, const gsl_vector *eval, const gsl_matrix *UtW, const gsl_vector *Uty, - const gsl_matrix *W, const gsl_vector *y); + const gsl_matrix *W, const gsl_vector *y, + const set<string> gwasnps); void AnalyzePlinkGXE(const gsl_matrix *U, const gsl_vector *eval, const gsl_matrix *UtW, const gsl_vector *Uty, const gsl_matrix *W, const gsl_vector *y, |