diff options
Diffstat (limited to 'src/io.cpp')
| -rw-r--r-- | src/io.cpp | 31 |
1 files changed, 16 insertions, 15 deletions
@@ -1759,17 +1759,18 @@ bool ReadFile_sample(const string &file_sample, vector<vector<int> > &indicator_ pheno_row.push_back(-9); ind_pheno_row.push_back(0); } + // read header line1 if(!safeGetline(infile, line).eof()) { - ch_ptr=strtok((char *)line.c_str(), " "); + ch_ptr=strtok((char *)line.c_str(), " \t"); if(strcmp(ch_ptr, "ID_1")!=0) {return false;} - ch_ptr=strtok(NULL, " "); + ch_ptr=strtok(NULL, " \t"); if(strcmp(ch_ptr, "ID_2")!=0) {return false;} - ch_ptr=strtok(NULL, " "); + ch_ptr=strtok(NULL, " \t"); if(strcmp(ch_ptr, "missing")!=0) {return false;} while (ch_ptr!=NULL) { num_cols++; - ch_ptr=strtok (NULL, " "); + ch_ptr=strtok (NULL, " \t"); } num_cols--; @@ -1780,30 +1781,30 @@ bool ReadFile_sample(const string &file_sample, vector<vector<int> > &indicator_ char col_type[num_cols]; // read header line2 if(!safeGetline(infile, line).eof()) { - ch_ptr=strtok ((char *)line.c_str(), " "); + ch_ptr=strtok ((char *)line.c_str(), " \t"); if(strcmp(ch_ptr, "0")!=0) {return false;} - ch_ptr=strtok(NULL, " "); + ch_ptr=strtok(NULL, " \t"); if(strcmp(ch_ptr, "0")!=0) {return false;} - ch_ptr=strtok(NULL, " "); + ch_ptr=strtok(NULL, " \t"); if(strcmp(ch_ptr, "0")!=0) {return false;} size_t it=0; - ch_ptr=strtok (NULL, " "); + ch_ptr=strtok (NULL, " \t"); if(ch_ptr!=NULL) while(ch_ptr!=NULL){ col_type[it++]=ch_ptr[0]; if(ch_ptr[0]=='D') {cvt_factor_levels.push_back(map<uint32_t, size_t>());num_cvt_in_file++;} if(ch_ptr[0]=='C') {num_cvt_in_file++;} if((ch_ptr[0]=='P')||(ch_ptr[0]=='B')) {num_p_in_file++;} - ch_ptr=strtok(NULL, " "); + ch_ptr=strtok(NULL, " \t"); } } while (!safeGetline(infile, line).eof()) { - ch_ptr=strtok ((char *)line.c_str(), " "); + ch_ptr=strtok ((char *)line.c_str(), " \t"); - for(int it=0;it<3;it++){ch_ptr=strtok(NULL, " ");} + for(int it=0;it<3;it++){ch_ptr=strtok(NULL, " \t");} size_t i=0; @@ -1827,7 +1828,7 @@ bool ReadFile_sample(const string &file_sample, vector<vector<int> > &indicator_ fac_cvt_i++; } - ch_ptr=strtok (NULL, " "); + ch_ptr=strtok (NULL, " \t"); i++; } @@ -1853,9 +1854,9 @@ bool ReadFile_sample(const string &file_sample, vector<vector<int> > &indicator_ while (!safeGetline(infile2, line).eof()) { vector<double> v_d; flag_na=0; - ch_ptr=strtok ((char *)line.c_str(), " "); + ch_ptr=strtok ((char *)line.c_str(), " \t"); - for(int it=0;it<3;it++){ch_ptr=strtok(NULL, " ");} + for(int it=0;it<3;it++){ch_ptr=strtok(NULL, " \t");} size_t i=0; @@ -1884,7 +1885,7 @@ bool ReadFile_sample(const string &file_sample, vector<vector<int> > &indicator_ fac_cvt_i++; } - ch_ptr=strtok (NULL, " "); + ch_ptr=strtok (NULL, " \t"); i++; } |