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-rw-r--r--src/gemma.cpp2
1 files changed, 1 insertions, 1 deletions
diff --git a/src/gemma.cpp b/src/gemma.cpp
index c890055..8f141a9 100644
--- a/src/gemma.cpp
+++ b/src/gemma.cpp
@@ -2739,7 +2739,7 @@ void GEMMA::BatchRun(PARAM &cPar) {
// PLINK analysis
if (cPar.file_gxe.empty()) {
cLmm.AnalyzePlink(U, eval, UtW, &UtY_col.vector, W,
- &Y_col.vector);
+ &Y_col.vector, cPar.setGWASnps);
}
else {
cLmm.AnalyzePlinkGXE(U, eval, UtW, &UtY_col.vector, W,