diff options
Diffstat (limited to 'src/gemma.cpp')
| -rw-r--r-- | src/gemma.cpp | 4 |
1 files changed, 2 insertions, 2 deletions
diff --git a/src/gemma.cpp b/src/gemma.cpp index e3fb005..2af8f8e 100644 --- a/src/gemma.cpp +++ b/src/gemma.cpp @@ -299,7 +299,7 @@ void GEMMA::PrintHelp(size_t option) { cout << " ..." << endl; cout << " missing value: NA" << endl; cout << " -p [filename] " - << " specify input BIMBAM phenotype file name" << endl; + << " specify input BIMBAM-style phenotype file name (when used with PLINK .fam phenotypes are ignored)" << endl; cout << " format: phenotype for individual 1" << endl; cout << " phenotype for individual 2" << endl; cout << " ..." << endl; @@ -1044,7 +1044,7 @@ void GEMMA::Assign(int argc, char **argv, PARAM &cPar) { str.clear(); str.assign(argv[i]); cPar.k_mode = atoi(str.c_str()); - } else if (strcmp(argv[i], "-n") == 0) { // set pheno column (range) + } else if (strcmp(argv[i], "-n") == 0) { // set pheno column (list/range) (cPar.p_column).clear(); while (argv[i + 1] != NULL && argv[i + 1][0] != '-') { ++i; |