diff options
Diffstat (limited to 'src/gemma.cpp')
| -rw-r--r-- | src/gemma.cpp | 33 |
1 files changed, 19 insertions, 14 deletions
diff --git a/src/gemma.cpp b/src/gemma.cpp index 39402b5..e31eaed 100644 --- a/src/gemma.cpp +++ b/src/gemma.cpp @@ -1,6 +1,8 @@ /* Genome-wide Efficient Mixed Model Association (GEMMA) - Copyright (C) 2011-2017, Xiang Zhou + Copyright © 2011-2017, Xiang Zhou + Copyright © 2017, Peter Carbonetto + Copyright © 2017, Pjotr Prins This program is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License as published by @@ -78,9 +80,7 @@ void gemma_gsl_error_handler (const char * reason, void GEMMA::PrintHeader(void) { cout << - "GEMMA " << version << " (" << date << ") by Xiang Zhou et al. (C) 2012-" << year << endl; - cout << - " http://www.xzlab.org/software.html, https://github.com/genetics-statistics" << endl; + "GEMMA " << version << " (" << date << ") by Xiang Zhou and team (C) 2012-" << year << endl; return; } @@ -149,19 +149,20 @@ void GEMMA::PrintLicense(void) { } void GEMMA::PrintHelp(size_t option) { + if (option == 0) { cout << endl; - cout << " type ./gemma -h [num] for detailed helps" << endl; + cout << " type ./gemma -h [num] for detailed help" << endl; cout << " options: " << endl; - cout << " 1: quick guide" << endl; - cout << " 2: file I/O related" << endl; - cout << " 3: SNP QC" << endl; - cout << " 4: calculate relatedness matrix" << endl; - cout << " 5: perform eigen decomposition" << endl; - cout << " 6: perform variance component estimation" << endl; - cout << " 7: fit a linear model" << endl; - cout << " 8: fit a linear mixed model" << endl; - cout << " 9: fit a multivariate linear mixed model" << endl; + cout << " 1: quick guide" << endl; + cout << " 2: file I/O related" << endl; + cout << " 3: SNP QC" << endl; + cout << " 4: calculate relatedness matrix" << endl; + cout << " 5: perform eigen decomposition" << endl; + cout << " 6: perform variance component estimation" << endl; + cout << " 7: fit a linear model" << endl; + cout << " 8: fit a linear mixed model" << endl; + cout << " 9: fit a multivariate linear mixed model" << endl; cout << " 10: fit a Bayesian sparse linear mixed model" << endl; cout << " 11: obtain predicted values" << endl; cout << " 12: calculate snp variance covariance" << endl; @@ -719,6 +720,10 @@ void GEMMA::PrintHelp(size_t option) { cout << endl; } + cout << "The GEMMA software is distributed under the GNU General Public v3" << endl; + cout << " -license show license information" << endl; + cout << + " see also http://www.xzlab.org/software.html, https://github.com/genetics-statistics" << endl; return; } |