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Diffstat (limited to 'mathfunc.h')
| -rw-r--r-- | mathfunc.h | 41 |
1 files changed, 0 insertions, 41 deletions
diff --git a/mathfunc.h b/mathfunc.h deleted file mode 100644 index d0e1696..0000000 --- a/mathfunc.h +++ /dev/null @@ -1,41 +0,0 @@ -/* - Genome-wide Efficient Mixed Model Association (GEMMA) - Copyright (C) 2011 Xiang Zhou - - This program is free software: you can redistribute it and/or modify - it under the terms of the GNU General Public License as published by - the Free Software Foundation, either version 3 of the License, or - (at your option) any later version. - - This program is distributed in the hope that it will be useful, - but WITHOUT ANY WARRANTY; without even the implied warranty of - MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - GNU General Public License for more details. - - You should have received a copy of the GNU General Public License - along with this program. If not, see <http://www.gnu.org/licenses/>. - */ - -#ifndef __MATHFUNC_H__ -#define __MATHFUNC_H__ - -#include "gsl/gsl_vector.h" -#include "gsl/gsl_matrix.h" - - -using namespace std; - -double VectorVar (const gsl_vector *v); -void CenterMatrix (gsl_matrix *G); -void CenterMatrix (gsl_matrix *G, gsl_vector *w); -void ScaleMatrix (gsl_matrix *G); -double CenterVector (gsl_vector *y); -void CalcUtX (const gsl_matrix *U, gsl_matrix *UtX); -void CalcUtX (const gsl_matrix *U, const gsl_matrix *X, gsl_matrix *UtX); -void CalcUtX (const gsl_matrix *U, const gsl_vector *x, gsl_vector *Utx); -double CalcHWE (const size_t n_hom1, const size_t n_hom2, const size_t n_ab); -void Kronecker(const gsl_matrix *K, const gsl_matrix *V, gsl_matrix *H); -void KroneckerSym(const gsl_matrix *K, const gsl_matrix *V, gsl_matrix *H); - - -#endif |