diff options
Diffstat (limited to 'guix.scm')
| -rw-r--r-- | guix.scm | 92 |
1 files changed, 89 insertions, 3 deletions
diff --git a/guix.scm b/guix.scm index e142d7e..6dcaa29 100644 --- a/guix.scm +++ b/guix.scm @@ -19,6 +19,8 @@ #:use-module (guix packages) #:use-module (guix git-download) #:use-module (guix build-system gnu) + #:use-module (guix utils) + #:use-module (gnu packages algebra) #:use-module (gnu packages base) #:use-module (gnu packages build-tools) @@ -27,6 +29,7 @@ #:use-module (gnu packages check) #:use-module (gnu packages cpp) #:use-module (gnu packages databases) + #:use-module (gnu packages gcc) #:use-module (gnu packages gdb) #:use-module (gnu packages guile) #:use-module (gnu packages guile-xyz) @@ -47,6 +50,90 @@ (define %pangemma-version (read-string (open-pipe "cat VERSION|tr -d $'\n'" OPEN_READ))) +(define-public openblas-pangemma +;; we are fixating on an older openblas, for now + (package + (name "openblas-pangemma") + (version "0.3.21") + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/xianyi/OpenBLAS") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "0yx1axiki12y0xz0d5s76vvl7ds36k0npv1sww08k2qslhz1g9qp")))) + (build-system gnu-build-system) + (properties `((tunable? . #t))) + (arguments + (list + #:tests? #f ;; skip tests + #:test-target "test" + ;; No default baseline is supplied for powerpc-linux. + #:substitutable? (not (target-ppc32?)) + #:make-flags + #~(list (string-append "PREFIX=" #$output) + (string-append "CFLAGS=-O3 -g -Wno-error -Wno-error=implicit-function-declaration") + "SHELL=bash" + "MAKE_NB_JOBS=0" ;use jobserver for submakes + + ;; This is the maximum number of threads OpenBLAS will ever use (that + ;; is, if $OPENBLAS_NUM_THREADS is greater than that, then NUM_THREADS + ;; is used.) If we don't set it, the makefile sets it to the number + ;; of cores of the build machine, which is obviously wrong. + "NUM_THREADS=128" + + ;; DYNAMIC_ARCH is only supported on some architectures. + ;; DYNAMIC_ARCH combined with TARGET=GENERIC provides a library + ;; which uses the optimizations for the detected CPU. This can + ;; be overridden at runtime with the environment variable + ;; OPENBLAS_CORETYPE=<type>, where "type" is a supported CPU + ;; type. On other architectures we target only the baseline CPU + ;; supported by Guix. + #$@(cond + ((or (target-x86-64?) + (target-x86-32?) + (target-ppc64le?) + (target-aarch64?)) + ;; Dynamic older enables a few extra CPU architectures + ;; on x86_64 that were released before 2010. + '("DYNAMIC_ARCH=1" "DYNAMIC_OLDER=1" "TARGET=GENERIC")) + ;; On some of these architectures the CPU type can't be detected. + ;; We list the oldest CPU core we want to have support for. + ;; On MIPS we force the "SICORTEX" TARGET, as for the other + ;; two available MIPS targets special extended instructions + ;; for Loongson cores are used. + ((target-mips64el?) + '("TARGET=SICORTEX")) + ((target-arm32?) + '("TARGET=ARMV7")) + ((target-riscv64?) + '("TARGET=RISCV64_GENERIC")) + (else '()))) + ;; no configure script + #:phases + #~(modify-phases %standard-phases + (delete 'configure) + (add-before 'build 'set-extralib + (lambda* (#:key inputs #:allow-other-keys) + ;; Get libgfortran found when building in utest. + (setenv "FEXTRALIB" + (string-append + "-L" + (dirname + (search-input-file inputs "/lib/libgfortran.so"))))))))) + (inputs + (list `(,gfortran "lib"))) + (native-inputs + (list cunit gfortran perl)) + (home-page "https://www.openblas.net/") + (synopsis "Optimized BLAS library based on GotoBLAS") + (description + "OpenBLAS is a BLAS library forked from the GotoBLAS2-1.13 BSD version.") + (license license:bsd-3))) + (define-public pangemma-base-git "Pangemma base build package" (package @@ -54,10 +141,9 @@ (version (git-version %pangemma-version "HEAD" %git-commit)) (source (local-file %source-dir #:recursive? #t)) (build-system gnu-build-system) - (properties `((tunable? . #t))) (inputs (list gsl - openblas + openblas-pangemma guile-3.0 `(,guile-3.0 "debug") ;; `(,guile-3.0 "dev") @@ -129,7 +215,7 @@ genome-wide association studies (GWAS).") (list catch2 gdb gsl - openblas + openblas-pangemma zlib)) ;; ("gsl-static" ,gsl-static) ;; ("zlib:static" ,zlib "static") |