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Diffstat (limited to 'doc/manual.tex')
| -rw-r--r-- | doc/manual.tex | 2 |
1 files changed, 1 insertions, 1 deletions
diff --git a/doc/manual.tex b/doc/manual.tex index c0119dc..ce24ba5 100644 --- a/doc/manual.tex +++ b/doc/manual.tex @@ -1454,7 +1454,7 @@ source code for detailed examples. \item \textcolor{red}{ -d [filename]} \quad specify input eigen value file name \item \textcolor{red}{ -u [filename]} \quad specify input eigen vector file name \item \textcolor{red}{ -c [filename] } \quad specify input covariates file name (optional); an intercept term is needed in the covariates file -\item \textcolor{red}{ -widv [filename] } \quad specify input weight file name; this is only used for weighting the residual variance of different individuals +\item \textcolor{red}{ -widv [filename] } \quad weight file contains a column of positive values to be used as weights for residuals---each weight corresponds to an individual, in which a high weight corresponds to high residual error variance for this individual (similar in format to phenotype file) \item \textcolor{red}{ -gxe [filename] } \quad specify input environmental covariate file name; this is only used for detecting gene x environmental interactions \item \textcolor{red}{ -cat [filename] } \quad specify input SNP category file name; this is only used for variance component estimation using summary statistics \item \textcolor{red}{ -beta [filename] } \quad specify input beta/z file name; this is only used for variance component estimation using summary statistics |