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diff --git a/doc/manual.tex b/doc/manual.tex index a12ce0d..7021e3c 100644 --- a/doc/manual.tex +++ b/doc/manual.tex @@ -719,7 +719,7 @@ The are a few SNP filters implemented in the software. \item Polymorphism. Non-polymorphic SNPs will not be included in the analysis. -\item Missingness. By default, SNPs with missingness below 5\% will +\item Missingness. By default, SNPs with missingness above 5\% will not be included in the analysis. Use ``-miss [num]'' to change. For example, ``-miss 0.1'' changes the threshold to 10\%. With ``-miss 1.0'' the filter is disabled. |