diff options
Diffstat (limited to 'doc/compile_GEMMA_win64.txt')
| -rw-r--r-- | doc/compile_GEMMA_win64.txt | 48 |
1 files changed, 48 insertions, 0 deletions
diff --git a/doc/compile_GEMMA_win64.txt b/doc/compile_GEMMA_win64.txt new file mode 100644 index 0000000..84f16ec --- /dev/null +++ b/doc/compile_GEMMA_win64.txt @@ -0,0 +1,48 @@ +// install R 3.4.3 +https://cran.r-project.org/bin/windows/base/ + +// install Rtools 3.4 +https://cran.r-project.org/bin/windows/Rtools/ + +// Download openblas (v0.2.19-Win64-int32) +https://sourceforge.net/projects/openblas/files/v0.2.19/ + +// Make a place to store the files +mkdir Github +cd Github/ + +// Clone the required dependancies +git clone https://github.com/eigenteam/eigen-git-mirror.git +git clone https://github.com/genetics-statistics/GEMMA.git + +// Download and install gsl2.4, unzip/tar into Github +http://gnu.askapache.com/gsl/ + +// Download and install msys from http://downloads.sourceforge.net/mingw/MSYS-1.0.11.exe +cd c:/msys/1.0 +// Run mysys +msys.bat + +// Under msys, Compile GSL-2.4 inside the msys +cd /c/ +cd Github/gsl-2.4 +./configure --prefix=C:/MinGW +make -j 4 +make install + +// Building Gemma on the R tool chain under windows using CMD compile gemma +cd gemma +make -j 2 + +// Get all the DLLs from: +- MinGW DLLs: https://sourceforge.net/projects/openblas/files/v0.2.12/mingw64_dll.zip/download +- DLLs from the compiled gsl-2.4 +- DLLs from openBLAS + +// Required DLLs: ++ libgcc_s_seh-1.dll ++ libgfortran-3.dll ++ libgsl-23.dll ++ libgslcblas-0.dll ++ libopenblas.dll ++ libquadmath-0.dll |