diff options
Diffstat (limited to 'Makefile')
| -rw-r--r-- | Makefile | 39 |
1 files changed, 29 insertions, 10 deletions
diff --git a/Makefile b/Makefile index 176dd2c..c57567b 100644 --- a/Makefile +++ b/Makefile @@ -26,6 +26,14 @@ # # make check # +# Run quick (development) tests with +# +# make fast-check +# +# Run full (lengthy) tests with +# +# make check-all +# # See also the INSTALL.md document in the source tree at # # https://github.com/genetics-statistics/GEMMA/blob/master/INSTALL.md @@ -34,14 +42,15 @@ SYS = LNX # LNX|MAC (Linux is the default) # Leave blank after "=" to disable; put "= 1" to enable DIST_NAME = gemma-0.97.3 -DEBUG = 1 # DEBUG mode, set DEBUG=0 for a release +DEBUG = 1 # DEBUG mode, set DEBUG=0 for a release SHOW_COMPILER_WARNINGS = WITH_LAPACK = 1 -WITH_OPENBLAS = # Defaults to LAPACK - OPENBLAS may be faster -FORCE_STATIC = # Static linking of libraries -GCC_FLAGS = -O3 # extra flags -Wl,--allow-multiple-definition -TRAVIS_CI = # used by TRAVIS for testing -EIGEN_INCLUDE_PATH=/usr/include/eigen3 +WITH_OPENBLAS = # Defaults to LAPACK - OPENBLAS may be faster +OPENBLAS_LEGACY = # Using older OpenBlas +FORCE_STATIC = # Static linking of libraries +GCC_FLAGS = -O3 -std=gnu++11 # extra flags -Wl,--allow-multiple-definition +TRAVIS_CI = # used by TRAVIS for testing +EIGEN_INCLUDE_PATH = /usr/include/eigen3 # -------------------------------------------------------------------- # Edit below this line with caution @@ -58,15 +67,25 @@ else CPP = g++ endif -ifdef OPENBLAS - WITH_LAPACK = # OPENBLAS usually includes LAPACK +ifeq ($(CPP), clang++) + # macOS Homebrew settings (as used on Travis-CI) + GCC_FLAGS=-O3 -std=c++11 -stdlib=libc++ -isystem//usr/local/opt/openblas/include -isystem//usr/local/include/eigen3 -Wl,-L/usr/local/opt/openblas/lib +endif + +ifdef WITH_OPENBLAS + OPENBLAS=1 + # WITH_LAPACK = # OPENBLAS usually includes LAPACK + CPPFLAGS += -DOPENBLAS + ifdef OPENBLAS_LEGACY + CPPFLAGS += -DOPENBLAS_LEGACY + endif endif ifdef DEBUG - CPPFLAGS = -g $(GCC_FLAGS) -std=gnu++11 -isystem/$(EIGEN_INCLUDE_PATH) -Icontrib/catch-1.9.7 -Isrc + CPPFLAGS += -g $(GCC_FLAGS) -isystem/$(EIGEN_INCLUDE_PATH) -Icontrib/catch-1.9.7 -Isrc else # release mode - CPPFLAGS = -DNDEBUG $(GCC_FLAGS) -std=gnu++11 -isystem/$(EIGEN_INCLUDE_PATH) -Icontrib/catch-1.9.7 -Isrc + CPPFLAGS += -DNDEBUG $(GCC_FLAGS) -isystem/$(EIGEN_INCLUDE_PATH) -Icontrib/catch-1.9.7 -Isrc endif ifdef SHOW_COMPILER_WARNINGS |