diff options
| -rw-r--r-- | guix.scm | 24 |
1 files changed, 20 insertions, 4 deletions
@@ -4,7 +4,6 @@ ;; ;; To get a development container (e.g., run in emacs shell). ;; -;; guix environment -C -l guix.scm ;; guix shell -C -f guix.scm (use-modules @@ -12,12 +11,13 @@ (guix gexp) (guix packages) (guix git-download) - (guix build-system meson) + (guix build-system gnu) (gnu packages algebra) (gnu packages base) (gnu packages compression) (gnu packages bioinformatics) (gnu packages build-tools) + (gnu packages check) (gnu packages curl) (gnu packages gdb) (gnu packages llvm) @@ -44,10 +44,11 @@ (define-public gemma-git (package (name "gemma-git") - (version (git-version %gemma-version "HEAD" %git-commit)) + (version (git-version "0.98.5" "HEAD" %git-commit)) (source (local-file %source-dir #:recursive? #t)) - (build-system meson-build-system) + (build-system gnu-build-system) (inputs `( + ("catch2" ,catch2) ("gdb" ,gdb) ("gsl" ,gsl) ;; ("shunit2" ,shunit2) ;; comes with gemma @@ -60,6 +61,21 @@ `(("perl" ,perl) ("which" ,which) )) + (arguments + `(#:phases + (modify-phases %standard-phases + (delete 'configure) + (delete 'validate-runpath) + (add-before 'build 'bin-mkdir + (lambda _ + (mkdir-p "bin") + )) + (replace 'install + (lambda* (#:key outputs #:allow-other-keys) + (let ((out (assoc-ref outputs "out"))) + (install-file "bin/gemma" (string-append out "/bin")))))) + #:tests? #f + #:parallel-tests? #f)) (home-page "https://github.com/genetics-statistics") (synopsis "Tool for genome-wide efficient mixed model association") (description "Genome-wide Efficient Mixed Model Association (GEMMA) |