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authorPjotr Prins2020-09-28 10:57:58 +0100
committerPjotr Prins2020-09-28 10:57:58 +0100
commitca7b513c2c93e70ae3dd888cfc67aaa52b5cc28b (patch)
tree35648cb5b14fd6fc2e5e9100e74867c839b82f36 /src/gemma_io.cpp
parent55d19a2dccc0227dcf02eb55733eada1a34f382a (diff)
downloadpangemma-ca7b513c2c93e70ae3dd888cfc67aaa52b5cc28b.tar.gz
Show computed variance
Diffstat (limited to 'src/gemma_io.cpp')
-rw-r--r--src/gemma_io.cpp5
1 files changed, 4 insertions, 1 deletions
diff --git a/src/gemma_io.cpp b/src/gemma_io.cpp
index 9c10e62..55f0aad 100644
--- a/src/gemma_io.cpp
+++ b/src/gemma_io.cpp
@@ -1510,7 +1510,10 @@ bool BimbamKin(const string file_geno, const set<string> ksnps,
gsl_vector_scale(geno, 1.0 / sqrt(geno_var));
}
- if (ns_test<1) write(geno,"geno z-scored");
+ if (ns_test<1) {
+ write(geno_var,"geno var");
+ write(geno,"geno z-scored");
+ }
// set the SNP column ns_test
gsl_vector_view Xlarge_col = gsl_matrix_column(Xlarge, ns_test % msize);