initial upload, version 0.95alpha

1 files changed, 52 insertions, 0 deletions

diff --git a/gemma.h b/gemma.h
new file mode 100644
index 0000000..acb1309
--- /dev/null
+++ b/gemma.h
@@ -0,0 +1,52 @@
+/*
+	Genome-wide Efficient Mixed Model Association (GEMMA)
+    Copyright (C) 2011  Xiang Zhou
+
+    This program is free software: you can redistribute it and/or modify
+    it under the terms of the GNU General Public License as published by
+    the Free Software Foundation, either version 3 of the License, or
+    (at your option) any later version.
+
+    This program is distributed in the hope that it will be useful,
+    but WITHOUT ANY WARRANTY; without even the implied warranty of
+    MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+    GNU General Public License for more details.
+
+    You should have received a copy of the GNU General Public License
+    along with this program.  If not, see <http://www.gnu.org/licenses/>.
+*/
+
+#ifndef __GEMMA_H__                
+#define __GEMMA_H__
+
+#ifdef FORCE_FLOAT
+#include "param_float.h"
+#else
+#include "param.h"
+#endif
+
+using namespace std;
+
+class GEMMA {
+
+public:			
+	//parameters
+	string version;
+	string date;
+	string year;
+	
+	//constructor
+	GEMMA(void);
+	
+	//functions
+	void PrintHeader (void);
+	void PrintHelp (size_t option);
+	void PrintLicense (void);
+	void Assign (int argc, char **argv, PARAM &cPar);
+	void BatchRun (PARAM &cPar);
+	void WriteLog (int argc, char **argv, PARAM &cPar);
+};
+
+
+#endif
+