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authorPeter Carbonetto2017-05-22 22:22:33 -0500
committerPeter Carbonetto2017-05-22 22:22:33 -0500
commit525467a1bf667b8f92a12b08849819687fcf9e31 (patch)
tree95631b0046f2e28b29ef78c94dc4ba70c95979a7
parent5d60be2af16a578a73ce596b35b09c88f8609f34 (diff)
downloadpangemma-525467a1bf667b8f92a12b08849819687fcf9e31.tar.gz
A few adjustments to the README.
-rw-r--r--README.md26
1 files changed, 13 insertions, 13 deletions
diff --git a/README.md b/README.md
index 9d12d1a..15b776d 100644
--- a/README.md
+++ b/README.md
@@ -7,7 +7,14 @@ GEMMA is a software toolkit for fast application of linear mixed
models (LMMs) and related models to genome-wide association studies
(GWAS) and other large-scale data sets.
-Features include:
+*Add note here about posting questions, comments or bug reports to
+Issues.*
+
+*Note: The image above summarizes physiological and behavioral trait
+loci discovered in CFW mice using GEMMA, from [Parker et al, Nat.
+Genet., 2006](https://doi.org/10.1038/ng.3609).*
+
+## Key features
1. Fast assocation tests implemented using the univariate linear mixed
model (LMM). In GWAS, this can correct for population structure and
@@ -16,7 +23,7 @@ proportion of variance in phenotypes explained by available genotypes
(PVE), often called "chip heritability" or "SNP heritability".
2. Fast association tests for multiple phenotypes implemented using a
-multivariate linear mixed model (lvLMM). In GWAS, this can correct for
+multivariate linear mixed model (mvLMM). In GWAS, this can correct for
populations tructure and sample nonexchangeability jointly in multiple
complex phenotypes.
@@ -30,26 +37,19 @@ algorithm can be used to estimate variance components when
individual-level data are available. For summary data, GEMMA uses the
MQS algorithm to estimate variance components.
-*Add note here about posting questions, comments or bug reports to
-Issues.*
-
-*Note: The image above summarizes physiological and behavioral trait
-loci discovered in CFW mice, from [Parker et al, Nat. Genet.,
-2006](https://doi.org/10.1038/ng.3609).*
-
-### Citing GEMMA
+## Citing GEMMA
*Add text here.*
-### License
+## License
Copyright (C) 2012–2017, Xiang Zhou.
-### Quick start
+## Quick start
*Add text here.*
-### Setup
+## Setup
*Add text here.*