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| author | Pjotr Prins | 2017-07-09 08:07:46 +0000 |
|---|---|---|
| committer | Pjotr Prins | 2017-07-09 08:07:46 +0000 |
| commit | 35405450385ded8797a9a6388e6e2801381f2894 (patch) | |
| tree | 07b4faa6befe38e5e3c821e00b2f73a907e06552 | |
| parent | e0671a336595deddaa287a1f1f4f718897d01b90 (diff) | |
| download | pangemma-35405450385ded8797a9a6388e6e2801381f2894.tar.gz | |
Test: check result
| -rwxr-xr-x | test/test_suite.sh | 7 |
1 files changed, 5 insertions, 2 deletions
diff --git a/test/test_suite.sh b/test/test_suite.sh index c6aa38e..effc056 100755 --- a/test/test_suite.sh +++ b/test/test_suite.sh @@ -2,10 +2,13 @@ gemma=../bin/gemma -testCenteredRelatednessMatrix() { +testCenteredRelatednessMatrixK() { $gemma -g ../example/mouse_hs1940.geno.txt.gz -p ../example/mouse_hs1940.pheno.txt \ - -a ../example/mouse_hs1940.anno.txt -gk -o mouse_hs1940 + -a ../example/mouse_hs1940.anno.txt -gk -o mouse_hs1940 assertEquals "3763600" `wc -w < output/mouse_hs1940.cXX.txt` + # assertEquals "15f680c" `md5sum < output/mouse_hs1940.cXX.txt | head -c 7` + assertEquals "0.335" `head -c 5 output/mouse_hs1940.cXX.txt` + assertEquals "29.691" `awk '{s+=substr($1,0,6)}END{print s}' output/mouse_hs1940.cXX.txt` } shunit2=`which shunit2` |