blob: c785ca64d8d3f2dfbc849b70050c17cfa6e2f89d (
plain)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
|
(define-module (gn services gn1-httpd-config)
#:export (%default-httpd22-modules
GN1-httpd-config-prod
GN1-httpd-config-test
))
(use-modules (gnu)
(ice-9 match)
(gn packages genenetwork)
(past packages web))
(use-service-modules web)
(define %default-httpd22-modules
(map (match-lambda
((name file)
(httpd-module
(name name)
(file file))))
'(("authn_file_module" "modules/mod_authn_file.so")
("authn_dbm_module" "modules/mod_authn_dbm.so")
("authn_anon_module" "modules/mod_authn_anon.so")
("authn_dbd_module" "modules/mod_authn_dbd.so")
("authn_default_module" "modules/mod_authn_default.so")
("authz_host_module" "modules/mod_authz_host.so")
("authz_groupfile_module" "modules/mod_authz_groupfile.so")
("authz_user_module" "modules/mod_authz_user.so")
("authz_dbm_module" "modules/mod_authz_dbm.so")
("authz_owner_module" "modules/mod_authz_owner.so")
("authz_default_module" "modules/mod_authz_default.so")
("auth_basic_module" "modules/mod_auth_basic.so")
("auth_digest_module" "modules/mod_auth_digest.so")
("dbd_module" "modules/mod_dbd.so")
("dumpio_module" "modules/mod_dumpio.so")
("reqtimeout_module" "modules/mod_reqtimeout.so")
("ext_filter_module" "modules/mod_ext_filter.so")
("include_module" "modules/mod_include.so")
("filter_module" "modules/mod_filter.so")
("substitute_module" "modules/mod_substitute.so")
("log_config_module" "modules/mod_log_config.so")
("logio_module" "modules/mod_logio.so")
("env_module" "modules/mod_env.so")
("mime_magic_module" "modules/mod_mime_magic.so")
("expires_module" "modules/mod_expires.so")
("headers_module" "modules/mod_headers.so")
("ident_module" "modules/mod_ident.so")
("setenvif_module" "modules/mod_setenvif.so")
("version_module" "modules/mod_version.so")
("ssl_module" "modules/mod_ssl.so")
("mime_module" "modules/mod_mime.so")
("dav_module" "modules/mod_dav.so")
("status_module" "modules/mod_status.so")
("autoindex_module" "modules/mod_autoindex.so")
("asis_module" "modules/mod_asis.so")
("info_module" "modules/mod_info.so")
("cgi_module" "modules/mod_cgi.so")
("dav_fs_module" "modules/mod_dav_fs.so")
("vhost_alias_module" "modules/mod_vhost_alias.so")
("negotiation_module" "modules/mod_negotiation.so")
("dir_module" "modules/mod_dir.so")
("imagemap_module" "modules/mod_imagemap.so")
("actions_module" "modules/mod_actions.so")
("speling_module" "modules/mod_speling.so")
("userdir_module" "modules/mod_userdir.so")
("alias_module" "modules/mod_alias.so")
("rewrite_module" "modules/mod_rewrite.so"))))
(define (GN1-httpd-config gn1-user cwd url gn1-port)
(let* ((gn1-source cwd))
(httpd-config-file
(server-name url)
;; Defaults to httpd, should be same as 'package' above to launch service.
(server-root httpd22-with-mod-python)
(user gn1-user)
(group "users")
(pid-file (string-append "/tmp/guix-gn1/httpd-gn1-source-" gn1-port ".pid"))
(error-log (string-append "/tmp/guix-gn1/httpd-gn1-source-error-" gn1-port ".log"))
(listen `(,gn1-port))
(modules (cons*
(httpd-module
(name "python_module")
(file "modules/mod_python.so"))
%default-httpd22-modules))
(extra-config (list "\
TypesConfig " httpd22-with-mod-python "/etc/httpd/mime.types
DefaultType application/octet-stream
# DocumentRoot MUST NOT be in the PythonPath. Because gn1-source must be in PythonPath we leave the document-root keyword above unset.
PythonPath \"sys.path+['/run/current-system/profile/lib/python2.4', '/run/current-system/profile/lib/python2.4/site-packages', '" gn1-source "/web/webqtl']\"
# same as 'listen' above
NameVirtualHost *:" gn1-port "
<VirtualHost *:" gn1-port ">
DocumentRoot " gn1-source "/web/
Alias /images " gn1-source "/web/images/
Alias /javascript " gn1-source "/web/javascript/
Alias /css " gn1-source "/web/css/
<Directory " gn1-source "/web/images>
AllowOverride None
Order allow,deny
Allow from all
</Directory>
<Directory " gn1-source "/web/javascript>
AllowOverride None
Order allow,deny
Allow from all
</Directory>
<Directory " gn1-source "/web/css>
AllowOverride None
Order allow,deny
Allow from all
</Directory>
</VirtualHost>
# CUSTOM: Add PHP 5 parsing (via CGI) handler and action
ScriptAlias /local-bin /run/current-system/profile/bin
AddHandler application/x-httpd-php5 php html htm
Action application/x-httpd-php5 /local-bin/php-cgi
SetEnv PHP_INI_SCAN_DIR " gn1-source "
<Directory " gn1-source "/web/test>
AllowOverride None
Order allow,deny
Allow from all
</Directory>
<Directory " gn1-source "/web/webqtl>
#what is the difference between these two?
AddHandler mod_python .py
#SetHandler python-program
#publisher has more debug information
PythonHandler " gn1-source "/web/webqtl/main.py
#PythonHandler mod_python.publisher
#PythonHandler mod_python.cgihandler
PythonOption mod_python.session.session_type FileSession
# only while debugging:
PythonDebug On
</Directory>
# only while debugging:
# <Location /mpinfo>
# SetHandler python-program
# PythonHandler mod_python.testhandler
# </Location>"
)))))
(define GN1-httpd-config-prod
(GN1-httpd-config "gn1"
"/home/gn1/production/gnshare/gn"
"gn1.genenetwork.org"
"8042"
))
(define GN1-httpd-config-test
(GN1-httpd-config "gn1"
"/home/gn1/production/gnshare/gn-pjotr-test"
"gn1-pjotr.genenetwork.org"
"8044"
))
|
