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(define-module (gn services genenetwork))
(use-modules (gnu)
(past packages python)
(past packages web)
(gn packages genenetwork)
(gn packages python24)
(gn services gn1-httpd-config))
(use-service-modules web)
(operating-system
(host-name "genenetwork")
(timezone "Etc/UTC")
(locale "en_US.utf8")
(bootloader (bootloader-configuration
(bootloader grub-bootloader)
(target "does-not-matter")))
(file-systems %base-file-systems)
;; No firmware for VMs
(firmware '())
(packages (cons* python-2.4
python24-htmlgen-GN1
python24-json-GN1
python24-mysqlclient ; MySQLdb
python24-numarray
python24-piddle
python24-pp-GN1 ; not python24-parallel, we need an older version
python24-pyx
python24-pyxlwriter
python24-qtlreaper
python24-rpy2
python24-svg-GN1
%base-packages))
(services (list (service special-files-service-type
;; The genotypes folder doesn't have it's shebangs patched.
`(("/usr/bin/python" ,(file-append python-2.4 "/bin/python"))))
(service httpd-service-type
(httpd-configuration
;; Must be a httpd-2.2 variant.
(package httpd22-with-mod-python)
(config GN1-httpd-config))))))
;; guix system container -L /path/to/guix-past/modules/ -L /path/to/guix-bioinformatics/ /path/to/guix-bioinformatics/gn/services/genenetwork.scm --network --expose=/gnshare/gn/web/genotypes
;; xdg-open http://localhost:8042
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