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(define-module (gn packages yaj)
#:use-module ((guix licenses) #:prefix license:)
#:use-module (guix packages)
#:use-module (guix utils)
#:use-module (guix download)
#:use-module (guix git-download)
#:use-module (guix build-system gnu)
#:use-module (guix build-system cmake)
#:use-module (guix build-system perl)
#:use-module (guix build-system python)
;; #:use-module (guix build-system ruby)
#:use-module (guix build-system r)
#:use-module (guix build-system trivial)
#:use-module (gnu packages)
#:use-module (gnu packages algebra)
#:use-module (gnu packages base)
#:use-module (gnu packages bioinformatics)
#:use-module (gnu packages boost)
#:use-module (gnu packages compression)
#:use-module (gnu packages databases)
#:use-module (gnu packages cpio)
#:use-module (gnu packages file)
#:use-module (gnu packages gcc)
#:use-module (gnu packages graphviz)
#:use-module (gnu packages java)
#:use-module (gnu packages linux)
; #:use-module (gnu packages ldc)
#:use-module (gnu packages machine-learning)
#:use-module (gnu packages maths)
#:use-module (gnu packages ncurses)
#:use-module (gnu packages perl)
#:use-module (gnu packages pkg-config)
#:use-module (gnu packages popt)
#:use-module (gnu packages protobuf)
#:use-module (gnu packages python)
#:use-module (gnu packages python-web)
#:use-module (gnu packages check)
#:use-module (gnu packages statistics)
#:use-module (gnu packages tbb)
#:use-module (gnu packages textutils)
#:use-module (gnu packages vim)
#:use-module (gnu packages web)
#:use-module (gnu packages xml)
#:use-module (gnu packages bootstrap)
#:use-module (gnu packages version-control)
#:use-module (gn packages bioinformatics)
#:use-module (gn packages gemma)
#:use-module (gn packages javascript)
#:use-module (gn packages phewas)
#:use-module (gn packages python)
#:use-module (gn packages statistics)
#:use-module (gn packages web)
#:use-module (srfi srfi-1))
(define-public python-elasticsearch
(package
(name "python-elasticsearch")
(version "6.3.0")
(source
(origin
(method url-fetch)
(uri (pypi-uri "elasticsearch" version))
(sha256
(base32
"1gpgb2vxl1q7hqrxxdlmfp9dxcl5wg3k78vxk2lka1cjaqd7mzw0"))))
(build-system python-build-system)
(native-inputs
`(("python-mock" ,python-mock)
("python-nosexcover" ,python-nosexcover)
("python-pyaml" ,python-pyaml)
("python-requests" ,python-requests)))
(propagated-inputs
`(("urllib3" ,python-urllib3)))
(arguments
;; tests require the test_elasticsearch module but it is not distributed.
`(#:tests? #f))
(home-page "https://github.com/elastic/elasticsearch-py")
(synopsis "Low-level client for Elasticsearch")
(description "Official low-level client for Elasticsearch. Its goal is to
provide common ground for all Elasticsearch-related code in Python; because of
this it tries to be opinion-free and very extendable.")
(license license:expat)))
(define-public python2-elasticsearch
(package-with-python2 python-elasticsearch))
(define-public yaj
(let ((md5 "93e745e9c"))
(package
(name "yaj")
(version "0.0.1")
(source
(origin
(method url-fetch)
(uri "http://biogems.info/genenetwork2-2.0-a8fcff4.svg") ; any old file
(file-name (string-append name "-" md5))
(sha256
(base32 "0rir1mcn3a8i1mbw3ppgnjl7wg71mapljik7n3v5i8j5ic95mqr5"))))
(build-system trivial-build-system)
(native-inputs `(("unzip" ,unzip)
("source" ,source)))
(inputs `(("sassc" ,sassc)))
(propagated-inputs
`(("python" ,python)
("python-elasticsearch" ,python-elasticsearch)
("python-flask" ,python-flask)
("python-jinja2" ,python-jinja2)
("python-mako" ,python-mako)
("python-markdown" ,python-markdown)
("python-misaka" ,python-misaka)
("python-pygit2" ,python-pygit2)
("web-bootstrap" ,web-bootstrap)
("sassc" ,sassc)
))
(arguments
`(#:modules ((guix build utils))
#:builder
(begin
(use-modules (guix build utils))
(let ((target (string-append (assoc-ref %outputs "out")
"/share")))
(write target)
(mkdir-p target)
; (copy-recursively (assoc-ref %build-inputs "source") target)
#t))))
(home-page "http://github.com/pjotrp/yaj/")
(synopsis "Yet another journal")
(description "YAJ.")
(license license:agpl3+))))
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