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(define-module (gn packages quality-control)
#:use-module ((guix licenses) #:prefix license:)
#:use-module (guix packages)
#:use-module (guix utils)
#:use-module (guix download)
#:use-module (guix git-download)
#:use-module (guix build-system gnu)
#:use-module (guix build-system asdf)
#:use-module (gnu packages lisp-check)
#:use-module (gnu packages lisp-xyz)
#:use-module (gnu packages))
(define-public libcsv
(let ((commit "b1d5212831842ee5869d99bc208a21837e4037d5")
(revision "0"))
(package
(name "libcsv")
(version commit)
(source
(origin
(method git-fetch)
(uri
(git-reference
(url "https://github.com/rgamble/libcsv")
(commit commit)))
(file-name (git-file-name name commit))
(sha256
(base32 "0nni9y0prz8lh3dywbha52yfg8qcf3dn0nb7iinfwlrmmamfyzg2"))))
(build-system gnu-build-system)
(arguments
`(#:make-flags
(list (string-append "CC=" ,(cc-for-target)))))
(home-page "https://github.com/rgamble/libcsv")
(synopsis "CSV library written in pure ANSI C")
(description
"CSV library written in pure ANSI C that can read and write CSV data.")
(license license:lgpl2.1+))))
(define-public sbcl-qc
(let ((commit "ed4254445b7dc247fa27d9189fd03841ad74f568")
(revision "3"))
(package
(name "sbcl-qc")
(version (git-version "20220331" revision commit))
(source
(origin
(method git-fetch)
(uri (git-reference
(url "https://git.genenetwork.org/jgart/qc")
(commit commit)))
(sha256
(base32 "12i9s1ipqarvq6gsjqycfm8d3ym7dv7vn3nxb5c6214xrd4mmzjj"))
(file-name (git-file-name name commit))))
(build-system asdf-build-system/sbcl)
(arguments
`(#:tests? #f ; Need to fix tests.
#:asd-files '("qc.asd")))
(native-inputs
(list sbcl-1am))
(inputs
(list sbcl-alexandria
sbcl-split-sequence))
(home-page "https://git.genenetwork.org/jgart/qc/")
(synopsis "Quality control of delimited files")
(description
"@code{cl-qc} is a Common Lisp library for linting the following in
delimited text files:
@itemize
@item Whitespace
@item Floating-point number well-formedness
@item GeneChip Platform ID checks for Affymetrix, Illumina, and others
@end itemize\n")
(license license:llgpl))))
(define-public cl-qc
(sbcl-package->cl-source-package sbcl-qc))
(define-public ecl-qc
(sbcl-package->ecl-package sbcl-qc))
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