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;; Bioinformatics module
(define-module (gn packages pangenome)
#:use-module ((guix licenses) #:prefix license:)
#:use-module (guix packages)
#:use-module (guix utils)
#:use-module (guix download)
#:use-module (guix git-download)
#:use-module (guix build-system cargo)
#:use-module (guix build-system gnu)
#:use-module (guix graph)
#:use-module (guix scripts graph)
#:use-module (guix store)
#:use-module (guix gexp)
#:use-module (gnu packages)
#:use-module (gnu packages base)
#:use-module (gnu packages crates-io)
#:use-module (gnu packages rust)
#:use-module (gnu packages version-control)
#:use-module (srfi srfi-1))
(define-public gfautil
(package
(name "gfautil")
(version "0.1.0")
(source
(origin
(method url-fetch)
(uri (crate-uri "gfautil" version))
(file-name
(string-append name "-" version ".tar.gz"))
(sha256
(base32
"0cgiis9v1nd4m7zxvgsz8jf8ijv4d8fa5wb7cpnjshksb8z7xh69"))))
(build-system cargo-build-system)
(arguments
`(#:cargo-inputs
(("rust-bstr" ,rust-bstr-0.2)
("rust-clap" ,rust-clap-2)
("rust-gfa" ,rust-gfa-0.6)
("rust-handlegraph" ,rust-handlegraph-0.3)
("rust-rayon" ,rust-rayon-1)
("rust-serde" ,rust-serde-1)
("rust-structopt" ,rust-structopt-0.3))))
(home-page "https://github.com/chfi/rs-gfa-utils")
(synopsis "Command line tools for working with GFA files")
(description
"This package provides command line tools for working with @acronym{GFA,
Graphical Fragment Assembly} files and related formats.")
(license license:expat)))
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