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(define-module (gn packages maths)
#:use-module (gnu packages)
#:use-module (guix packages)
#:use-module (guix download)
#:use-module (guix utils)
#:use-module (guix gexp)
#:use-module (gnu packages gcc)
#:use-module (gnu packages gperf)
#:use-module (gnu packages maths)
#:use-module (gnu packages texinfo)
#:use-module (gn packages gnulib)
#:use-module (srfi srfi-1))
(define-public octave-3.4.3
(package
(inherit octave-cli)
(name "octave")
(version "3.4.3")
(source
(origin
(method url-fetch)
(uri (string-append "mirror://gnu/octave/octave-"
version ".tar.gz"))
(sha256
(base32
"04lh3crzwpramvfvxq34n2r29pmfl37rssj853nz9a3pyq7wrrir"))
(patches (search-patches "gnulib-gets.patch"
"octave-nested-class.patch"))))
(arguments
(substitute-keyword-arguments (package-arguments octave-cli)
((#:configure-flags cf)
`(cons "--enable-docs=no" ; docs fail to build
,cf))
((#:tests? _ #f) #f) ; tests hang
((#:phases phases)
`(modify-phases ,phases
(add-after 'unpack 'patch-configure-script
(lambda _
(substitute* '("configure"
"src/DLD-FUNCTIONS/__delaunayn__.cc"
"src/DLD-FUNCTIONS/__voronoi__.cc"
"src/DLD-FUNCTIONS/convhulln.cc")
(("qhull/qhull.h") "libqhull/libqhull.h")
(("qhull/qhull_a.h") "libqhull/qhull_a.h"))
#t))
(add-after 'unpack 'update-gnulib
(lambda* (#:key inputs #:allow-other-keys)
(let ((gnulib (assoc-ref inputs "gnulib")))
(install-file (string-append gnulib "/lib/fseeko.c") "libgnu")
#t)))
(replace 'configure-makeinfo
(lambda* (#:key inputs #:allow-other-keys)
(substitute* "src/help.cc"
(("\"makeinfo\"")
(string-append
"\"" (assoc-ref inputs "texinfo") "/bin/makeinfo\"")))
#t))))))
(native-inputs
`(("gnulib" ,(package-source gnulib))
("gcc-5" ,gcc-5)
,@(fold alist-delete (package-native-inputs octave-cli)
'("lzip"))))
(inputs
`(("glpk" ,glpk-4.48)
("gperf" ,gperf)
,@(fold alist-delete (package-inputs octave-cli)
;; suitesparse provides cholmod_common_struct, may need older version
'("glpk" "suitesparse"))))))
;; 4.49 is the last version with _glp_lpx_simplex exported
;; 4.49 is the version where all lpx_ routines were removed
(define-public glpk-4.48
(package
(inherit glpk)
(version "4.48")
(source
(origin
(method url-fetch)
(uri (string-append "mirror://gnu/glpk/glpk-"
version ".tar.gz"))
(sha256
(base32
"1cddqsdcfwavdklg7hsfifppsry81dx3c17wzk6r22mjjpwcihmb"))))))
(define-public suitesparse-3.5.0
(package
(inherit suitesparse)
(version "3.5.0")
(source
(origin
(method url-fetch)
(uri (string-append
"http://faculty.cse.tamu.edu/davis/SuiteSparse/SuiteSparse-"
version ".tar.gz"))
(sha256
(base32
"0npn7c1j5qag5m2r0cmh3bwc42c1jk8k2yg2cfyxlcrp0h7wn4rc"))))
(arguments
(substitute-keyword-arguments (package-arguments suitesparse)
((#:phases phases)
`(modify-phases ,phases
(add-after 'unpack 'unpack-metis
(lambda* (#:key inputs #:allow-other-keys)
(let ((metis (assoc-ref inputs "metis-source")))
(invoke "tar" "xvf" metis)
;; backported from 4.0.3
(substitute* (find-files "metis-4.0")
(("log2") "ilog2")))
#t))
(add-after 'unpack 'fix-source
(lambda _
(substitute* "UFconfig/Makefile"
(("Lib/") ""))
;; octave-3.4.3 expects it to be built with -fPIC
(substitute* "UFconfig/UFconfig.mk"
(("-O3") "-O3 -fPIC"))
#t))
(add-before 'install 'prepare-directories
(lambda* (#:key outputs #:allow-other-keys)
(let ((out (assoc-ref outputs "out")))
(mkdir-p (string-append out "/lib"))
(mkdir-p (string-append out "/include")))
#t))))))
(native-inputs
`(("metis-source" ,(origin
(method url-fetch)
(uri "http://glaros.dtc.umn.edu/gkhome/fetch/sw/metis/OLD/metis-4.0.1.tar.gz")
(sha256
(base32
"0lnkdfdrmmyy67h356bgdc06acvmcr26av9kdvqlws12znrr5iv0"))))
,@(package-native-inputs suitesparse)))
(inputs
`(,@(fold alist-delete (package-inputs suitesparse)
'("metis"))))))
(define-public gsl-x86-64-v2
(package/inherit gsl
(name "gsl-x86-64-v2")
(arguments
(substitute-keyword-arguments (package-arguments gsl)
((#:make-flags flags #~'())
#~(append (list "CFLAGS=-march=x86-64-v2"
"CXXFLAGS=-march=x86-64-v2")
#$flags))
((#:configure-flags flags #~'())
#~(append (list (string-append "--libdir=" #$output
"/lib/glibc-hwcaps/x86-64-v2"))
#$flags))
;; The building machine can't necessarily run the code produced.
((#:tests? _ #t) #f)
((#:phases phases #~%standard-phases)
#~(modify-phases #$phases
(add-after 'install 'remove-extra-files
(lambda _
(delete-file-recursively (string-append #$output "/bin"))
(delete-file-recursively (string-append #$output "/include"))))))))
(supported-systems '("x86_64-linux"))
(properties `((hidden? . #t)
(tunable? . #f)))))
(define-public gsl-x86-64-v3
(package/inherit gsl
(name "gsl-x86-64-v3")
(arguments
(substitute-keyword-arguments (package-arguments gsl)
((#:make-flags flags #~'())
#~(append (list "CFLAGS=-march=x86-64-v3"
"CXXFLAGS=-march=x86-64-v3")
#$flags))
((#:configure-flags flags #~'())
#~(append (list (string-append "--libdir=" #$output
"/lib/glibc-hwcaps/x86-64-v3"))
#$flags))
;; The building machine can't necessarily run the code produced.
((#:tests? _ #t) #f)
((#:phases phases #~%standard-phases)
#~(modify-phases #$phases
(add-after 'install 'remove-extra-files
(lambda _
(delete-file-recursively (string-append #$output "/bin"))
(delete-file-recursively (string-append #$output "/include"))))))))
(supported-systems '("x86_64-linux"))
(properties `((hidden? . #t)
(tunable? . #f)))))
(define-public gsl-x86-64-v4
(package/inherit gsl
(name "gsl-x86-64-v4")
(outputs '("out" "static"))
(arguments
(substitute-keyword-arguments (package-arguments gsl)
((#:make-flags flags #~'())
#~(append (list "CFLAGS=-march=x86-64-v4"
"CXXFLAGS=-march=x86-64-v4")
#$flags))
((#:configure-flags flags #~'())
#~(append (list (string-append "--libdir=" #$output
"/lib/glibc-hwcaps/x86-64-v4"))
#$flags))
;; The building machine can't necessarily run the code produced.
((#:tests? _ #t) #f)
((#:phases phases #~%standard-phases)
#~(modify-phases #$phases
(add-after 'install 'remove-extra-files
(lambda _
(delete-file-recursively (string-append #$output "/bin"))
(delete-file-recursively (string-append #$output "/include"))))))))
(supported-systems '("x86_64-linux"))
(properties `((hidden? . #t)
(tunable? . #f)))))
;; This copy of gsl will automatically use the libraries that target the
;; x86_64 psABI which the hardware supports.
(define-public gsl-hwcaps
(package/inherit gsl
(name "gsl-hwcaps")
(arguments
(substitute-keyword-arguments (package-arguments gsl)
((#:phases phases #~%standard-phases)
#~(modify-phases #$phases
(add-after 'install 'install-optimized-libraries
(lambda* (#:key inputs outputs #:allow-other-keys)
(let ((hwcaps "/lib/glibc-hwcaps"))
(copy-recursively
(string-append (assoc-ref inputs "gsl-x86-64-v2")
hwcaps "/x86-64-v2")
(string-append #$output hwcaps "/x86-64-v2"))
(copy-recursively
(string-append (assoc-ref inputs "gsl-x86-64-v3")
hwcaps "/x86-64-v3")
(string-append #$output hwcaps "/x86-64-v3"))
(copy-recursively
(string-append (assoc-ref inputs "gsl-x86-64-v4")
hwcaps "/x86-64-v4")
(string-append #$output hwcaps "/x86-64-v4")))))))))
(native-inputs
(modify-inputs (package-native-inputs gsl)
(append gsl-x86-64-v2
gsl-x86-64-v3
gsl-x86-64-v4)))
(properties `((tunable? . #f)))))
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