blob: 1a34c9866e75198481a767a3f1c3fe81b72ce1e0 (
plain)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
|
;;; GNU Guix --- Functional package management for GNU
;;; Copyright © 2016 Dennis Mungai <dmngaie@gmail.com>
;;; Copyright © 2019 Efraim Flashner <efraim@flashner.co.il>
;;;
;;; This file is part of GNU Guix.
;;;
;;; GNU Guix is free software; you can redistribute it and/or modify it
;;; under the terms of the GNU General Public License as published by
;;; the Free Software Foundation; either version 3 of the License, or (at
;;; your option) any later version.
;;;
;;; GNU Guix is distributed in the hope that it will be useful, but
;;; WITHOUT ANY WARRANTY; without even the implied warranty of
;;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
;;; GNU General Public License for more details.
;;;
;;; You should have received a copy of the GNU General Public License
;;; along with GNU Guix. If not, see <http://www.gnu.org/licenses/>.
(define-module (gn packages hyphy)
#:use-module ((guix licenses) #:prefix license:)
#:use-module (guix download)
#:use-module (guix build-system cmake)
#:use-module (guix packages)
#:use-module (gnu packages algebra)
#:use-module (gnu packages mpi)
#:use-module (gnu packages python))
(define-public hyphy ; guix: check
(package
(name "hyphy")
(version "2.2.6")
(source (origin
(method url-fetch)
(uri (string-append "https://github.com/veg/hyphy/archive/" version
".tar.gz"))
(file-name (string-append name "-" version ".tar.gz"))
(sha256
(base32
"00i3609nywb1xfq50p3kvfbvahql241ciq23jrf67z0yp4y5l5a9"))))
(inputs
`(("python" ,python-2)
("openmpi" ,openmpi)
("fftw-openmpi" ,fftw-openmpi)))
(build-system cmake-build-system)
(arguments
'(#:make-flags '("MPI")
#:configure-flags (list "-DCMAKE_BUILD_TYPE=Release"
(string-append "-DINSTALL_PREFIX="
(assoc-ref %outputs "out")))
#:tests? #f))
(synopsis "hyphy: an open-source software package for the analysis
of genetic sequences using techniques in phylogenetics, molecular
evolution, and machine learning.")
(description "HyPhy is an open-source software package for the
analysis of genetic sequences using techniques in phylogenetics,
molecular evolution, and machine learning. It features a complete
graphical user interface (GUI) and a rich scripting language for
limitless customization of analyses. Additionally, HyPhy features
support for parallel computing environments (via message passing
interface (MPI)) and it can be compiled as a shared library and called
from other programming environments such as Python and R. ")
(home-page "http://hyphy.org")
(license license:expat)))
|
