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;; Experimental packaging for the Common Workflow Language (started by Bruno)
(define-module (gn packages cwl)
#:use-module ((guix licenses) #:prefix license:)
#:use-module (gnu packages)
#:use-module (gnu packages python)
#:use-module (gnu packages rdf)
#:use-module (gn packages python)
#:use-module (guix download)
#:use-module (guix packages)
#:use-module (guix git-download)
#:use-module (guix utils)
; #:use-module (guix build-system gnu)
#:use-module (guix build-system python)
; #:use-module (guix build-system trivial)
#:use-module (srfi srfi-1))
(define-public python-cwltool ; guix: needs work
(package
(name "python-cwltool")
(version "1.0.20150916041152")
(source
(origin
(method url-fetch)
(uri (string-append
"https://pypi.python.org/packages/source/c/cwltool/cwltool-"
version
".tar.gz"))
(sha256
(base32
"1kqxc6nvq4nr8qdv39ycdi6fhzaipgjpmbghsz94ij6jhf5r3dq2"))))
(build-system python-build-system)
(inputs
`(("python-setuptools" ,python-setuptools)
("python-pyparsing" ,python-pyparsing)
))
(propagated-inputs
`(("python-schema-salad" ,python-schema-salad)
("python-html5lib" ,python-html5lib)
))
(arguments `(#:tests? #f)) ;; CWL includes no tests.
(home-page
"https://github.com/common-workflow-language/common-workflow-language")
(synopsis
"Common workflow language reference implementation")
(description
"Common workflow language reference implementation")
(license license:asl2.0)))
(define-public python2-cwltool
(package-with-python2 python-cwltool))
(define-public python-schema-salad
(package
(name "python-schema-salad")
(version "1.0.2")
(source
(origin
(method url-fetch)
(uri (string-append
"https://pypi.python.org/packages/source/s/schema-salad/schema-salad-"
version
".tar.gz"))
(sha256
(base32
"09axiiirq73s1cs21n8mkdslaca2gxc2mlayyl6yiaq98cfgfh37"))))
(build-system python-build-system)
(arguments `(#:tests? #f)) ;; CWL includes no tests.
(inputs
`(("python-cython" ,python-cython)
("python-setuptools" ,python-setuptools)
("python-rdflib-jsonld" ,python-rdflib-jsonld)
("python-mistune" ,python-mistune)))
(propagated-inputs
`(("python-rdflib-4.2" ,python-rdflib-4.2)
("python-avro" ,python-avro)
("python-pyyaml" ,python-pyyaml)
("python-requests" ,python-requests)
("python-shellescape" ,python-shellescape)
))
(home-page
"https://github.com/common-workflow-language/common-workflow-language")
(synopsis
"Schema Annotations for Linked Avro Data (SALAD)")
(description
"Schema Annotations for Linked Avro Data (SALAD)")
(license license:asl2.0)))
(define-public python2-schema-salad
(package-with-python2 python-schema-salad))
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