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(define-module (gn packages bnw)
#:use-module ((guix licenses) #:prefix license:)
#:use-module (guix packages)
#:use-module (guix git-download)
#:use-module (guix build-system trivial)
#:use-module (gnu packages bash)
#:use-module (gn packages graphviz)
#:use-module (gn packages maths)
#:use-module (gnu packages python))
(define-public bnw
(let ((commit "eb6b002b924694808384f1a8d7c6d1121806ae04")
(revision "1"))
(package
(name "bnw")
(version (git-version "1.22" revision commit)) ; June 28, 2019
(source (origin
(method git-fetch)
(uri (git-reference
(url "https://github.com/ziejd2/BNW.git")
(commit commit)))
(file-name (git-file-name name version))
(sha256
(base32
"10qwykp2zcyxih6a52icvy30ps69qk4v3jgirmdpw1l15zi4p2wq"))))
(build-system trivial-build-system)
(arguments
`(#:modules ((guix build utils))
#:builder
(begin
(use-modules (guix build utils))
(let* ((out (assoc-ref %outputs "out"))
(source (assoc-ref %build-inputs "source"))
(bash (assoc-ref %build-inputs "bash"))
(graphviz (assoc-ref %build-inputs "graphviz"))
(octave (assoc-ref %build-inputs "octave"))
(python (assoc-ref %build-inputs "python")))
(copy-recursively source out)
(for-each (lambda (file)
(patch-shebang file
(list (string-append bash "/bin")
(string-append octave "/bin")
(string-append python "/bin"))))
(find-files out ".*"))
(with-directory-excursion out
(substitute*
(append '("home.php")
(find-files "sourcecodes" ".php")
(find-files "sourcecodes/run_scripts" ".*"))
(("/usr/bin/dot") (string-append graphviz "/bin/dot"))))))))
(native-inputs `(("source" ,source)))
(inputs
`(("bash" ,bash-minimal)
("graphviz" ,graphviz-2.26)
("octave" ,octave-3.4.3)
("python" ,python-2)))
(home-page "http://compbio.uthsc.edu/BNW/")
(synopsis "Bayesian Network Webserver")
(description "This contains the code for the @dfn{Bayesian Network Webserver} (BNW).")
(license (list license:gpl2
license:gpl2+
license:lgpl2.1+)))))
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