From ac6c844f497f9e52887336a35542483053df6ce7 Mon Sep 17 00:00:00 2001
From: Efraim Flashner
Date: Sun, 24 Sep 2023 13:50:14 +0300
Subject: smoothxg: Link with odgi

---
 gn/packages/bioinformatics.scm | 6 +++++-
 1 file changed, 5 insertions(+), 1 deletion(-)

(limited to 'gn')

diff --git a/gn/packages/bioinformatics.scm b/gn/packages/bioinformatics.scm
index c833e6a..c2a2e09 100644
--- a/gn/packages/bioinformatics.scm
+++ b/gn/packages/bioinformatics.scm
@@ -1713,11 +1713,14 @@ dictionaries to record a queryable version of the graph.")
                  (("\".*libsdsl\\.a\"") "\"-lsdsl\"")
                  (("\".*libdivsufsort\\.a\"") "\"-ldivsufsort\"")
                  (("\".*libdivsufsort64\\.a\"") "\"-ldivsufsort64\"")
+                 (("\".*libodgi\\.a\"") "\"-lodgi\"")
                  (("\\$\\{sdsl-lite_INCLUDE\\}")
                   (search-input-directory inputs "/include/sdsl"))
                  (("\\$\\{sdsl-lite-divsufsort_INCLUDE\\}")
                   (dirname
-                    (search-input-file inputs "/include/divsufsort.h"))))))
+                    (search-input-file inputs "/include/divsufsort.h")))
+                 (("\\$\\{odgi_INCLUDE\\}")
+                  (search-input-directory inputs "/include/odgi")))))
            (add-before 'build 'build-abPOA
              (lambda* (#:key make-flags #:allow-other-keys)
                ;; This helps with portability to other architectures.
@@ -1729,6 +1732,7 @@ dictionaries to record a queryable version of the graph.")
     (inputs
      (list jemalloc
            libdivsufsort
+           odgi
            openmpi
            pybind11
            python
-- 
cgit 1.4.1