From 614b1fdeabea68e89704850f969b77db46ff5251 Mon Sep 17 00:00:00 2001
From: Frederick Muriuki Muriithi
Date: Tue, 10 Sep 2024 14:26:48 -0500
Subject: Revert "(gn packages gemma-wrapper): Add new dependencies."

This reverts commit ab2ae88f2698cde22cae05c432f0f1ae0db7b070.

At this point, running GEMMA will fail because it attempts to extract
files into the /tmp directory, which leads to permission issues when
there is an attempt to change the permission bits of /tmp.
---
 gn/packages/gemma.scm | 18 +-----------------
 1 file changed, 1 insertion(+), 17 deletions(-)

(limited to 'gn')

diff --git a/gn/packages/gemma.scm b/gn/packages/gemma.scm
index cac444d..22564ad 100644
--- a/gn/packages/gemma.scm
+++ b/gn/packages/gemma.scm
@@ -19,12 +19,6 @@
   #:use-module (gnu packages parallel)
   #:use-module (gnu packages perl)
   #:use-module (gnu packages web)
-  #:use-module (gnu packages vim)
-  #:use-module (gnu packages time)
-  #:use-module (gnu packages less)
-  #:use-module (gnu packages libffi)
-  #:use-module (gnu packages databases)
-  #:use-module (gnu packages python-science)
   #:use-module (gn packages shell)
   #:use-module (srfi srfi-1))
 
@@ -128,17 +122,7 @@ genome-wide association studies (GWAS).")
       ("parallel" ,parallel) ;; gnu parallel
       ))
     (propagated-inputs `(
-      ("coreutils" ,coreutils) ;; gemma-wrapper uses 'cat'
-      ("binutils" ,binutils)
-      ("which" ,which)
-      ("vim" ,vim)
-      ("less" ,less)
-      ("xz" ,xz)
-      ("tar" ,tar)
-      ("python-lmdb" ,python-lmdb)
-      ("python-cffi" ,python-cffi)
-      ("time" ,time)
-      ("python-pandas" ,python-pandas)))
+      ("coreutils" ,coreutils))) ;; gemma-wrapper uses 'cat'
     (arguments
      `(#:tests? #f  ;; from release 0.99.7 tests should run
        #:phases
-- 
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