From 697a8d85ddb765aae22c757dc194052e09011dab Mon Sep 17 00:00:00 2001
From: pjotrp
Date: Sat, 28 Nov 2020 16:20:53 +0000
Subject: gemma-gn2: updated to latest

---
 gn/packages/gemma.scm | 10 +++++-----
 gn/packages/yaj.scm   |  1 -
 2 files changed, 5 insertions(+), 6 deletions(-)

(limited to 'gn/packages')

diff --git a/gn/packages/gemma.scm b/gn/packages/gemma.scm
index e6d49b4..e780ea5 100644
--- a/gn/packages/gemma.scm
+++ b/gn/packages/gemma.scm
@@ -101,10 +101,10 @@
 
 
 (define-public gemma-gn2 ; Version used in GeneNetwork. Guix candidate - generic openblas version
-  (let ((commit "97547ee82e0bd1cc2210612415b0ceb135dbba6d"))
+  (let ((commit "f623b4775d47b2c2697a4925bd044412a7db49d3"))
   (package
     (name "gemma-gn2")
-    (version (string-append "0.98.2-" (string-take commit 7)))
+    (version (string-append "0.98.3-" (string-take commit 7)))
     (source (origin
              (method git-fetch)
              (uri (git-reference
@@ -113,7 +113,7 @@
              (file-name (string-append name "-" version "-checkout"))
              (sha256
               (base32
-               "0p6pw4gm5fqr4yb9vklgj5abvqazmp1kk9cg3l2n8qsrj1p7j657"))))
+               "1p8a7kkfn1mmrg017aziy544aha8i9h6wd1x2dk3w2794wl33qb7"))))
     ; guix environment -C guix --ad-hoc gcc-toolchain gdb gsl openblas zlib bash ld-wrapper perl vim which
     (inputs `(
               ("gsl" ,gsl)
@@ -177,10 +177,10 @@ genome-wide association studies (GWAS).")
    ))
 
 (define-public gemma-gn2-dev ; Dev version for GeneNetwork. Not a Guix candidate
-  (let ((commit "d53a04edc476d820de7a611cacc8b105115aa3cc"))
+  (let ((commit "f623b4775d47b2c2697a4925bd044412a7db49d3"))
   (package
     (name "gemma-gn2-dev")
-    (version (string-append "0.98.2-" (string-take commit 7)))
+    (version (string-append "0.98.3-" (string-take commit 7)))
     (source (origin
              (method git-fetch)
              (uri (git-reference
diff --git a/gn/packages/yaj.scm b/gn/packages/yaj.scm
index dc19f0f..1b56f42 100644
--- a/gn/packages/yaj.scm
+++ b/gn/packages/yaj.scm
@@ -45,7 +45,6 @@
   #:use-module (gnu packages bootstrap)
   #:use-module (gnu packages version-control)
   #:use-module (gn packages bioinformatics)
-  #:use-module (gn packages gemma)
   #:use-module (gn packages javascript)
   #:use-module (gn packages phewas)
   #:use-module (gn packages python)
-- 
cgit v1.2.3