From 9351ff09f6ac8c557ce3e847518f04f281e7b3dc Mon Sep 17 00:00:00 2001
From: pjotrp
Date: Thu, 29 Sep 2016 08:51:42 +0000
Subject: Move qtlreaper to genenetwork.scm

---
 gn/packages/bioinformatics.scm | 35 -----------------------------------
 gn/packages/genenetwork.scm    | 35 +++++++++++++++++++++++++++++++++++
 2 files changed, 35 insertions(+), 35 deletions(-)

diff --git a/gn/packages/bioinformatics.scm b/gn/packages/bioinformatics.scm
index f62949d..b509fc3 100644
--- a/gn/packages/bioinformatics.scm
+++ b/gn/packages/bioinformatics.scm
@@ -772,41 +772,6 @@ to sample traits.  Also includes a number of utility functions for
 data manipulation and visualization.")
   (license license:gpl2+))))
 
-(define-public qtlreaper
-  (package
-    (name "qtlreaper")
-    (version "1.1.1")
-    (source
-     (origin
-       (method url-fetch)
-       (uri (string-append
-             "mirror://sourceforge/qtlreaper/qtlreaper-" version ".tar.gz"
-             ;; "http://downloads.sourceforge.net/project/qtlreaper/qtlreaper/1.1.1/qtlreaper-1.1.1.tar.gz?r=http%3A%2F%2Fsourceforge.net%2Fprojects%2Fqtlreaper%2Ffiles%2Flatest%2Fdownload&ts=1358975786&use_mirror=iweb"))
-             ))
-       (file-name (string-append name "-" version ".tar.gz"))
-       (sha256
-        (base32
-         "0rbf030940nbbbkggdq2dxiy3c0jv8l4y3vvyfxhqimgj0qv3l1x"))))
-    (build-system python-build-system)
-    ;; (native-inputs
-    ;; `(("python-setuptools" ,python-setuptools)))
-    (arguments
-     `(#:python ,python-2
-       #:tests? #f))   ; no 'setup.py test'
-    (home-page "http://qtlreaper.sourceforge.net/")
-    (synopsis "Tool for scanning expression data for QTLs")
-    (description
-     "It is essentially the batch-oriented version of WebQTL. It
-requires, as input, expression data from members of a set of
-recombinant inbred lines and genotype information for the same
-lines.  It searches for an association between each expression trait
-and all genotypes and evaluates that association by a permutation
-test.  For the permutation test, it performs only as many permutations
-as are necessary to define the empirical P-value to a reasonable
-precision. It also performs bootstrap resampling to estimate the
-confidence region for the location of a putative QTL.")
-    (license license:gpl2+)))
-
 (define-public plink2
   (package
     (name "plink2")
diff --git a/gn/packages/genenetwork.scm b/gn/packages/genenetwork.scm
index a7317c6..d8a1813 100644
--- a/gn/packages/genenetwork.scm
+++ b/gn/packages/genenetwork.scm
@@ -87,6 +87,41 @@
     (description #f)
     (license #f)))
 
+(define-public qtlreaper
+  (package
+    (name "qtlreaper")
+    (version "1.1.1")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (string-append
+             "mirror://sourceforge/qtlreaper/qtlreaper-" version ".tar.gz"
+             ;; "http://downloads.sourceforge.net/project/qtlreaper/qtlreaper/1.1.1/qtlreaper-1.1.1.tar.gz?r=http%3A%2F%2Fsourceforge.net%2Fprojects%2Fqtlreaper%2Ffiles%2Flatest%2Fdownload&ts=1358975786&use_mirror=iweb"))
+             ))
+       (file-name (string-append name "-" version ".tar.gz"))
+       (sha256
+        (base32
+         "0rbf030940nbbbkggdq2dxiy3c0jv8l4y3vvyfxhqimgj0qv3l1x"))))
+    (build-system python-build-system)
+    ;; (native-inputs
+    ;; `(("python-setuptools" ,python-setuptools)))
+    (arguments
+     `(#:python ,python-2
+       #:tests? #f))   ; no 'setup.py test'
+    (home-page "http://qtlreaper.sourceforge.net/")
+    (synopsis "Tool for scanning expression data for QTLs")
+    (description
+     "Batch-oriented version of WebQTL. It requires, as input,
+expression data from members of a set of recombinant inbred lines and
+genotype information for the same lines.  It searches for an
+association between each expression trait and all genotypes and
+evaluates that association by a permutation test.  For the permutation
+test, it performs only as many permutations as are necessary to define
+the empirical P-value to a reasonable precision. It also performs
+bootstrap resampling to estimate the confidence region for the
+location of a putative QTL.")
+    (license license:gpl2+)))
+
 (define-public genenetwork1
   (let ((commit "d622c803b"))
   (package
-- 
cgit v1.2.3