From 04270e097988523dee6fbdc5ccf72e9c850a8626 Mon Sep 17 00:00:00 2001
From: Pjotr Prins
Date: Thu, 28 May 2020 06:35:16 -0500
Subject: Updating gemma to build on latest

---
 gn/packages/gemma.scm       | 6 +++---
 gn/packages/genenetwork.scm | 2 +-
 2 files changed, 4 insertions(+), 4 deletions(-)

diff --git a/gn/packages/gemma.scm b/gn/packages/gemma.scm
index 758832e..24be94c 100644
--- a/gn/packages/gemma.scm
+++ b/gn/packages/gemma.scm
@@ -141,7 +141,7 @@
 
 
 (define-public gemma-gn2 ; guix candidate - generic openblas version
-  (let ((commit "b309569fe9497befa008ac2d2cbc04f2e861ce76"))
+  (let ((commit "dfd0066a1e483ce807efc019f0b2de8decd9e33c"))
   (package
     (name "gemma-gn2")
     (version (string-append "0.98.2-" (string-take commit 7)))
@@ -153,7 +153,7 @@
              (file-name (string-append name "-" version "-checkout"))
              (sha256
               (base32
-               "0bmwp2g7xm1zpixlljpf7zzsgj8f34pyxra7by30yxl1r52kfjdd"))))
+               "0bdi4rgg5k6n060lvp2mvrwawmqnwmdn8gd2rdbmgbgzgs88dsml"))))
     (inputs `(
               ("gsl" ,gsl)
               ("shunit2" ,shunit2)
@@ -211,7 +211,7 @@ genome-wide association studies (GWAS).")
                   (lambda* (#:key outputs #:allow-other-keys)
                            (let ((out (assoc-ref outputs "out")))
                              (install-file "bin/gemma" (string-append out "/bin"))))))
-       #:tests? #f
+       ; #:tests? #f
        #:parallel-tests? #f))
    ))
 
diff --git a/gn/packages/genenetwork.scm b/gn/packages/genenetwork.scm
index ecba3d0..3b7cc71 100644
--- a/gn/packages/genenetwork.scm
+++ b/gn/packages/genenetwork.scm
@@ -263,7 +263,7 @@ location of a putative QTL.")
        ("r-wgcna" ,r-wgcna)
        ("redis" ,redis)
        ("mariadb" ,mariadb)
-       ("gemma" ,gemma-gn2-git)
+       ("gemma" ,gemma-gn2)
        ("gemma-wrapper" ,gemma-wrapper)
        ; ("genenetwork2-files-small" ,genenetwork2-files-small)
        ("plink-ng-gn" ,plink-ng-gn)
-- 
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