From 027827b9606a41edf5c778b98639b0f015f56cc9 Mon Sep 17 00:00:00 2001
From: Efraim Flashner
Date: Wed, 20 Apr 2022 16:14:32 +0300
Subject: Remove upstreamed packages

---
 gn/packages/jupyterhub.scm | 19 -----------
 gn/packages/python.scm     | 82 ----------------------------------------------
 2 files changed, 101 deletions(-)

diff --git a/gn/packages/jupyterhub.scm b/gn/packages/jupyterhub.scm
index 838412b..322999b 100644
--- a/gn/packages/jupyterhub.scm
+++ b/gn/packages/jupyterhub.scm
@@ -267,25 +267,6 @@ balancing and can configure itself automatically and dynamically.")
      "Simple, generic API for escaping strings.")
     (license license:expat)))
 
-;; This package is deprecated upstream.
-;; Author suggests using python-toml
-(define-public python-pytoml
-  (package
-    (name "python-pytoml")
-    (version "0.1.21")
-    (source
-      (origin
-        (method url-fetch)
-        (uri (pypi-uri "pytoml" version))
-        (sha256
-         (base32
-          "1rv1byiw82k7mj6aprcrqi2vdabs801y97xhfnrz7kxds34ggv4f"))))
-    (build-system python-build-system)
-    (home-page "https://github.com/avakar/pytoml")
-    (synopsis "A parser for TOML-0.4.0")
-    (description "A parser for TOML-0.4.0")
-    (license license:expat)))
-
 (define-public python-jupyter-repo2docker
   (package
     (name "python-jupyter-repo2docker")
diff --git a/gn/packages/python.scm b/gn/packages/python.scm
index a689b1c..61c5133 100644
--- a/gn/packages/python.scm
+++ b/gn/packages/python.scm
@@ -32,28 +32,6 @@
   #:use-module (guix build-system python)
   #:use-module (srfi srfi-1))
 
-(define-public python-pyvcf
-  (package
-   (name "python-pyvcf")
-   (version "0.6.8")
-   (source
-    (origin
-     (method url-fetch)
-     (uri (pypi-uri "pyvcf" version))
-     (sha256
-      (base32
-       "1ngryr12d3izmhmwplc46xhyj9i7yhrpm90xnsd2578p7m8p5n79"))))
-   (build-system python-build-system)
-   (arguments
-     `(#:tests? #f))
-   (home-page
-    "https://github.com/jamescasbon/PyVCF")
-   (synopsis
-    "Variant Call Format (VCF) parser for Python")
-   (description
-    "Variant Call Format (VCF) parser for Python")
-   (license #f)))
-
 (define-public python-rpy2-2.9
   (package
     (inherit python-rpy2)
@@ -1409,31 +1387,6 @@ sorted order.")
     "Easy to use fixtures to write regression tests.")
    (license license:expat)))
 
-(define-public python-pytest-datadir
-  (package
-   (name "python-pytest-datadir")
-   (version "1.3.1")
-   (source
-    (origin
-     (method url-fetch)
-     (uri (pypi-uri "pytest-datadir" version))
-     (sha256
-      (base32
-       "066bg6wlzgq2pqnjp73dfrcmk8951xw3aqcxa3p1axgqimrixbyk"))))
-   (build-system python-build-system)
-   (propagated-inputs
-    `(("python-pathlib2" ,python-pathlib2)
-      ("python-pytest" ,python-pytest)))
-   (inputs
-    `(("python-setuptools-scm" ,python-setuptools-scm)))
-   (home-page
-    "http://github.com/gabrielcnr/pytest-datadir")
-   (synopsis
-    "pytest plugin for test data directories and files")
-   (description
-    "pytest plugin for test data directories and files")
-   (license license:expat)))
-
 (define-public python-pre-commit
   (package
    (name "python-pre-commit")
@@ -1808,41 +1761,6 @@ The goal of the project is to parse everything in the Pip requirement
 file format spec.")
     (license license:bsd-3)))
 
-(define-public python-pytest-pudb
-  ;; PyPi does not include tests
-  (let ((commit "a6b3d2f4d35e558d72bccff472ecde9c9d9c69e5")
-        (revision "0"))
-    (package
-      (name "python-pytest-pudb")
-      (version "0.7.0")
-      (source
-       (origin
-         (method git-fetch)
-         (uri (git-reference
-                (url "https://github.com/wronglink/pytest-pudb")
-                (commit commit)))
-         (file-name (string-append name "-" commit))
-         (sha256
-          (base32 "1c0pypxx3y8w7s5bz9iy3w3aablnhn81rnhmb0is8hf2qpm6k3w0"))))
-      (build-system python-build-system)
-      (propagated-inputs (list pudb))
-      (native-inputs
-        (list python-pytest))
-      (arguments
-        `(#:phases
-          (modify-phases %standard-phases
-            (replace 'check
-              (lambda* (#:key inputs outputs tests? #:allow-other-keys)
-                (when tests?
-                  (add-installed-pythonpath inputs outputs)
-                  (invoke "pytest" "-v")))))))
-      (home-page "https://github.com/wronglink/pytest-pudb")
-      (synopsis "Pytest PuDB debugger integration")
-      (description
-  "@code{python-pytest-pudb} provides PuDB debugger integration based on
-  pytest PDB integration.")
-      (license license:expat))))
-
 (define-public python-supervisor
   (package
     (name "python-supervisor")
-- 
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