| Age | Commit message (Collapse) | Author | |
|---|---|---|---|
| 2026-03-24 | pylmm-gn2 moved to past | pjotrp | |
| 2026-03-23 | Packages reintroduced for GN | pjotrp | |
| 2026-03-23 | Moving failing packages out | pjotrp | |
| 2026-03-23 | Fixes to build | pjotrp | |
| 2026-03-22 | Fix (julia) packages by disabling tests (sorry) | pjotrp | |
| 2026-03-22 | Fixed (node) by removing dev dependencies before install | pjotrp | |
| 2026-03-22 | Drop unused GN and lizardfs packages | pjotrp | |
| 2026-03-22 | Fixes builds | pjotrp | |
| 2026-03-22 | fix (genenetwork2) build. | pjotrp | |
| Summary of fixes: - guix-rust-past-crates: All local-file "./patches/..." replaced with search-patches (10 patches across the file) - python-asserts: Disabled tests (#:tests? #f) - python-htmlgen: Disabled tests (#:tests? #f) | |||
| 2026-03-22 | Moving to guix-bioinformatics-past | pjotrp | |
| 2026-03-22 | move patches | pjotrp | |
| 2026-03-22 | Removed (delly) | pjotrp | |
| 2026-03-22 | Mark RISC-V packages as obsolete | pjotrp | |
| 2026-03-22 | Continue cleanup | pjotrp | |
| 2026-03-22 | Delete older files | pjotrp | |
| 2026-03-22 | Moved redundant and older packages to new repo: guix-bioinformatics-past. It ↵ | pjotrp | |
| may have been too much, but we can move back | |||
| 2026-03-22 | Moving (genenetwork1, lisp) packages to guix-bioinformatics-past repo | pjotrp | |
| 2026-03-22 | update (pggb_) pggb 0.7.4 built successfully | pjotrp | |
| 2026-03-22 | Update (vg) to 1.72.0 and merged dev vg-gn package | pjotrp | |
| Summary of changes: - Merged vg-gn into vg (single package) - Updated version from 1.65.0 to 1.72.0 - Added openssl and wfa2-lib to inputs (new dependencies in 1.72.0) - Added libwfa2 to PKG_CONFIG_DEPS - Added subdirectory include paths (vcflib, fastahack, cairo, raptor2) via CPLUS_INCLUDE_PATH/C_INCLUDE_PATH - Fixed fastahack linking (use -lfastahack instead of adding .so to archive) - Fixed vcf2tsv test path to use (which "vcf2tsv") - Tests enabled and passing (1343/1343) | |||
| 2026-03-21 | Fix (vg) v1.65.0 with vcflib build [AI] | pjotrp | |
| 2026-03-21 | Fix (vcflib) upgrade to latest 1.0.15 | pjotrp | |
| Includes vcflib CMake patch that will be merged upstream. | |||
| 2026-03-21 | Bump (vcflib) version to 1.0.15. Remove wfa2-lib-static package | pjotrp | |
| 2026-03-21 | fix (vcflib) zig support added back in | pjotrp | |
| 2026-03-21 | Updated (wfa2lib) to latest version and simplified package definition [AI] | pjotrp | |
| 2026-03-21 | simplify(vcflib): moving patches to main vcflib source tree [AI] | pjotrp | |
| 2026-03-21 | Added tests(vcflib) | pjotrp | |
| 2026-03-21 | Updated (vg) now uses last vcflib release without vendoring v1.0.7. | pjotrp | |
| Still, it would be good to fix the includes in vcflib itself. | |||
| 2026-03-20 | python-build: Add new package definition. | Frederick Muriuki Muriithi | |
| 2026-03-20 | python-typing-inspection: Add new package definition. | Frederick Muriuki Muriithi | |
| 2026-03-20 | python-backoff: Add new package definition. | Frederick Muriuki Muriithi | |
| 2026-03-20 | python-annotated-doc: Add new package definition. | Frederick Muriuki Muriithi | |
| 2026-03-20 | python-oslex: Add new package definition. | Frederick Muriuki Muriithi | |
| 2026-03-20 | python-mslex: Add new package definition. | Frederick Muriuki Muriithi | |
| 2026-03-20 | Move wfa2-lib ahead of where it is used. | Arun Isaac | |
| 2026-03-20 | Deprecate wfmash 0.14 in favour of latest. | Arun Isaac | |
| 2026-03-16 | Add (R/shiny system containers) two system containers added for xushenglab [AI] | pjotrp | |
| Two R/shiny system containers added jumpsem and jumpshiny that we were running ad hoc | |||
| 2026-03-15 | Add R packages for jumpshiny, Jumpsem_web | pjotrp | |
| Add package for vg that vendors in older vcflib - this will change soon. | |||
| 2026-03-11 | fix vcflib | pjotrp | |
| 2026-03-10 | Use license: | pjotrp | |
| 2026-03-05 | Import r-dendextend and r-gggenes for cosigt workflow | pjotrp | |
| 2026-02-27 | Add liftoff. | Arun Isaac | |
| Change-Id: I8155083427bef2d4652e32e8b1f6a833bfd7c011 | |||
| 2026-02-27 | Add python-parasail. | Arun Isaac | |
| Change-Id: I2002ccfc73ab5205b01a430f5be89e976b563765 | |||
| 2026-02-27 | Add parasail. | Arun Isaac | |
| Change-Id: Ibd442b9414910bdb7566feb6c5f6523313ecbd16 | |||
| 2026-02-25 | Import missing modules for python-curio. | Arun Isaac | |
| Change-Id: Ia5d581ed8b6d89351278dc116db4ac21382198b6 | |||
| 2026-02-25 | Import (guix build-system pyproject). | Arun Isaac | |
| 2026-02-25 | Add python-curio. | Arun Isaac | |
| Upstream removed python-curio. | |||
| 2026-02-25 | Import (gnu packages python-check) for python-nose. | Arun Isaac | |
| Upstream moved python-nose to (gnu packages python-check). | |||
| 2026-02-25 | Add vcflib. | Arun Isaac | |
| Guix upstream removed vcflib. This package is still broken. Nevertheless, we add it to prevent the channel from breaking. | |||
| 2026-02-17 | Update gfaffix to 0.2.1. | Arun Isaac | |
| We update gfaffix to 0.2.1 and move it to the new cargo-inputs style. | |||
| 2026-02-16 | Add python-cfgraph. | Arun Isaac | |
| Upstream removed python-cfgraph. | |||
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index : guix-bioinformatics | |
| Bioinformatics packages for GNU Guix |
| about summary refs log tree commit diff |