| Age | Commit message (Expand) | Author |
|---|
| 39 hours | genenetwork2: Remove python-sqlalchemy.•••* gn/packages/genenetwork.scm (genenetwork2)[propagated-inputs]:
Delete python-sqlalchemy.
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
| Munyoki Kilyungi |
| 3 days | python-flask-session: Override package with egregious name.•••Redefine package, making use of an egregious name to force us to get
rid of it once we pin a guix channel with an updated
python-flask-session.
| Frederick Muriuki Muriithi |
| 3 days | genenetwork3: upgrade to commit 89b941b. | Frederick Muriuki Muriithi |
| 3 days | python-flask-session: Provide stop-gap to fix build failures. | Frederick Muriuki Muriithi |
| 3 days | python-authlib: upgrate to version 1.5.0. | Frederick Muriuki Muriithi |
| 3 days | Replace %gnu-build-system-modules with %default-gnu-imported-modules•••Replace the deprecated %gnu-build-system-modules with the newer
%default-gnu-imported-modules in order to quiet the deprecation notice
when building stuff from guix-bioinformatics.
| Frederick Muriuki Muriithi |
| 3 days | gn-libs: Add required, build-specific dependencies. | Frederick Muriuki Muriithi |
| 4 days | python: python-flask-debugtoobar: Update to 0.16.0•••* gn/packages/python.scm (python-flask-debugtoolbar):
[source]: Use github URL instead of PyPi.
[build-system]: use pyproject-build-system.
[native-inputs]: Add python-pytest.
[propagated-inputs]: Add python-flit-core and python-flask-sqlalchemy.
| Munyoki Kilyungi |
| 4 days | Upgrade guix channel to c84ba4f.•••* .guix-channel: Upgrade guix channel to c84ba4f.
* gn/packages/crates-io.scm: Import (gnu packages crates-check) for
rust-criterion.
* gn/packages/crates-io.scm, gn/packages/bioinformatics.scm:
Import (gnu packages crates-compression) for rust-flate2.
| Arun Isaac |
| 8 days | Genenetwork2: Upgrade to commit 96433ed. | Munyoki Kilyungi |
| 8 days | Genenetwork3: Upgrade to c01aa26. | Munyoki Kilyungi |
| 9 days | Genenetwork2: Upgrade to commit 2a3df8c. | Frederick Muriuki Muriithi |
| 9 days | Genenetwork3: Upgrade to commit 99fd507. | Frederick Muriuki Muriithi |
| 9 days | gn-uploader: Upgrade to commit 64c404e. | Frederick Muriuki Muriithi |
| 9 days | gn-auth: upgrade to commit 073395f. | Frederick Muriuki Muriithi |
| 10 days | gn-guile: Update gn-guile.•••* gn/packages/guile.scm: Import guile-lmdb and guile-lib.
(gn-guile): Update to 169d26710c978484f8e9464a95be6eaa47fa704e. Also,
make lmdb-publishdata-export script executable.
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
| Munyoki Kilyungi |
| 10 days | gn: genenetwork2: Add javascript-xterm, javascript-xterm-style.•••* gn/packages/genenetwork.scm (genenetwork2) [propagated-inputs]: Add
javascript-xterm, javascript-xterm-style.
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
| Alexander_Kabui |
| 10 days | gn: javascript: Update javascript-xterm, javascript-xterm-style.•••* gn/packages/javascript.scm (javascript-xterm): Update to 5.3.0
* gn/packages/javascript.scm (javascript-xterm-style): Update to 5.3.0
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
| Alexander_Kabui |
| 12 days | gn: pggb: Use wfmash-0.14 instead of the latest wfmash.•••* gn/packages/bioinformatics.scm (pggb)[inputs]: Replace wfmash with
wfmash-0.14.
| Arun Isaac |
| 12 days | gn: Add wfmash-0.14.•••* gn/packages/bioinformatics.scm (wfmash-0.14): New variable.
| Arun Isaac |
| 2025-02-11 | gn: pggb: Update to 0.7.2.•••* gn/packages/bioinformatics.scm (pggb): Update to 0.7.2.
| Arun Isaac |
| 2025-02-11 | gn: pggb: Remove unused dependencies.•••These dependencies are referred to in the documentation and put into
the Docker image, but are not actually used by pggb.
* gn/packages/bioinformatics.scm (pggb)[inputs]: Remove fastix,
mummer, pafplot and vcflib.
| Arun Isaac |
| 2025-02-11 | gn: odgi: Disable tests.•••* gn/packages/bioinformatics.scm (odgi): Disable tests.
| Arun Isaac |
| 2025-02-10 | gn-guile: Make dependencies available in profile after build | Frederick Muriuki Muriithi |
| 2025-02-10 | genenetwork2: Upgrade to commit 4f9a46e. | Frederick Muriuki Muriithi |
| 2025-02-04 | gn-uploader: Upgrade to commit d8b58c3. | Frederick Muriuki Muriithi |
| 2025-02-03 | gn-auth: upgrade to commit 8e64f7f. | Frederick Muriuki Muriithi |
| 2025-02-03 | gn-auth: upgrade to commit eec8128. | Frederick Muriuki Muriithi |
| 2025-01-29 | gn-uploader: upgrade to commit 8ab53c9. | Frederick Muriuki Muriithi |
| 2025-01-29 | gn-uploader: Upgrade to commit 848bd53. | Frederick Muriuki Muriithi |
| 2025-01-29 | gn-uploader: Add javascript-datatables as a dependency. | Frederick Muriuki Muriithi |
| 2025-01-28 | Change "dirs-allowed" setting to a list•••Virtuoso's DirsAllowed setting expects a comma-delimited list of
directories. See
https://docs.openlinksw.com/virtuoso/ch-server/#ini_parameters
Initially, we only allowed one path. This commit fixes that, allowing
a list of paths to be passed in.
| Frederick Muriuki Muriithi |
| 2025-01-28 | gn-uploader: Bump up commit to b7d4263. | Frederick Muriuki Muriithi |
| 2025-01-28 | gn-uploader: Upgrade to version 0.1.0 and commit cb57ff0e.•••We are gaining some stability at this point, so we raise the minor
version. Also mark the commit for the demo.
| Frederick Muriuki Muriithi |
| 2025-01-26 | Genenetwork3: upgrade to commit 0d902ec. | Frederick Muriuki Muriithi |
| 2025-01-25 | Genenetwork2: Upgrade to commit 314c6d5. | Frederick Muriuki Muriithi |
| 2025-01-25 | gnu: r-rrbgen: Fix name typo.•••* gn/packages/bioinformatics.scm (r-rrbgen)[name]: Fix typo.
| Arun Isaac |
| 2025-01-22 | genenetwork2: Upgrade to commit 0db8dca.•••Fixes bug with the registration page.
| Frederick Muriuki Muriithi |
| 2025-01-21 | gn-libs: upgrade to commit 72a95f8. | Frederick Muriuki Muriithi |
| 2025-01-20 | gn-auth: Upgrade to e345a04. | Frederick Muriuki Muriithi |
| 2025-01-20 | Genenetwork3: Upgrade to commit 5d2aebb. | Frederick Muriuki Muriithi |
| 2025-01-20 | Genenetwork2: Upgrade to commit 6d4d48e. | Frederick Muriuki Muriithi |
| 2025-01-10 | genenetwork2: upgrade to commit 798d3c6. | Frederick Muriuki Muriithi |
| 2025-01-10 | gn-auth: upgrade to commit 877a7a3. | Frederick Muriuki Muriithi |
| 2025-01-08 | genenetwork2: upgrade to commit c450890. | Frederick Muriuki Muriithi |
| 2025-01-08 | genenetwork2: upgrade to commit 854639b. | Frederick Muriuki Muriithi |
| 2025-01-08 | genenetwork2: upgrade to commit dc606f3. | Frederick Muriuki Muriithi |
| 2025-01-08 | genenetwork2: upgrade to commit 236a488. | Frederick Muriuki Muriithi |
| 2025-01-07 | genenetwork2: upgrade to commit 9bdc8ca. | Frederick Muriuki Muriithi |
| 2025-01-07 | genenetwork2: update to commit 7e6bfe4. | Frederick Muriuki Muriithi |
