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2020-12-06gn: python3-genenetwork2: Generate svg graph from python3-package...* gn/packages/genenetwork.scm (python3-genenetwork2): [native-inputs]: Add graphviz. [arguments]{generate-dag-svg-file}: New phase. BonfaceKilz
2020-12-06gn: python3-genenetwork2: Remove unnecessary begin form...* gn/packages/genenetwork.scm (python3-genenetwork2): [arguments] {generate-graph}: Remove begin form. BonfaceKilz
2020-12-06gn: fix module importsEfraim Flashner
2020-12-04gn: python3-genenetwork2: Generate graph from python3-package...* gn/packages/genenetwork.scm: Add new #:use-modules: (guix graph) (guix scripts graph) (guix store) (python3-genenetwork2)[arguments]{generate-graph}: New phase after install that uses d3js to generate a new graph which uses d3js as a backend. BonfaceKilz
2020-12-04gn: python3-genenetwork2: Add package link in generated deps file...* gn/packages/genenetwork.scm (python3-genenetwork2): [arguments]{generate-dependency-file}: Add link to "genenetwork.scm" file. BonfaceKilz
2020-12-03octopus: update slurm servicesEfraim Flashner
2020-12-02gn: python3-genenetwork2: Generate static dependencies file...* gn/packages/genenetwork.scm (python3-genenetwork2): [arguments]{generate-dependency-file}: Add new phase after "install" that generates a "DEPENDENCY.md" file which will be displayed in the gn2 web interface. BonfaceKilz
2020-12-01octopus: add slurm servicesEfraim Flashner
2020-11-29gn: remove unecessary importEfraim Flashner
2020-11-29gn: python-xlsxwriter available upstream.Efraim Flashner
2020-11-28gemma-gn2: updated to latestpjotrp
2020-11-26octopus: Add munge service, initial octopus OS configEfraim Flashner
2020-11-25gn: Add lizardfsEfraim Flashner
2020-11-23upstream cwltools and dependant packagesEfraim Flashner
2020-11-21Updated CWLpjotrp
2020-11-21cwltools: updatedPjotr Prins
2020-11-20gn: genenetwork2: Remove vim from propagated inputs...* gn/packages/genenetwork.scm (genenetwork2): [propagated-inputs]: Remove vim. Right now, building vim fails, thereby causing python3-genenetwork2 to fail. BonfaceKilz
2020-11-20gn: python3-genenetwork: Replace python-mistune with python-markdownBonfaceKilz
2020-11-19gn: python3-genenetwork2: Comment out python-flask-socketio...* gn/packages/genenetwork.scm (python3-genenetwork2): [propagated-inputs]: Comment out python-flask-socketio. Causes build on Penguin2 to fail. BonfaceKilz
2020-11-17gn: python-flask-socketio: New inputs...* gn/packages/python.scm (python-flask-socketio): Add support for eventlet. [propagated-inputs]: Add python-dnspython, python-eventlet, python-monotonic. BonfaceKilz
2020-11-17gn: python3-genenetwork2: Add python-flask-socketio...* gn/packages/genenetwork.scm (python3-genenetwork2): [propagated-inputs]: Add python-flask-socketio. BonfaceKilz
2020-11-16gn: python: Add python-flask-socketioBonfaceKilz
2020-11-16gn: python: Add python-socketioBonfaceKilz
2020-11-16gn: python: Add python-engioneioBonfaceKilz
2020-11-16gn: python3-genenetwork2: Add javascript-ckeditor...* gn/packages/genenetwork.scm (python3-genenetwork2): [propagated-inputs]: Add javascript-ckeditor. BonfaceKilz
2020-11-14gn: python3-genenetwork2: Add python-rdflibBonfaceKilz
2020-11-12gn: python24-parallel: Fix package description.Efraim Flashner
2020-11-12python24-pp: rename to python24-parallelEfraim Flashner
2020-11-12gn: python24-pp: Inherit from python-paralllel.Efraim Flashner
2020-11-10gn: bh20-seq-resource: Add python-twint as input...* gn/packages/bioinformatics.scm (bh20-seq-resource): [propagated-input]: Add python-twint. BonfaceKilz
2020-11-10gn: python-twint: Patch twint to fix some bugs...* gn/packages/twint.scm (python-twint): [patches]: Add 2 new patches. [arguments]: Rename 'cast-variables-properly to 'twint-hot-fixes. * python-twint-mentions.patch: New file. * python-twint-userlist.patch: New file. See: https://github.com/twintproject/twint/issues/1012 BonfaceKilz
2020-11-10gn: python-twint: Add substitute that casts some params properlyBonfaceKilz
2020-11-05Indent file properly...* gn/packages/twint.scm: Indent the whole file properly. BonfaceKilz
2020-11-05gn: python-twint: Upgrade package....* gn/packages/twint.scm (python-twint): [source]: Update to commit a45a8a which by-passes twitters move on removing their v1 apis. [arguments]: Delete "dataclasses" dependency from setup.py. [propagated-inputs]: Remove python-aiodns and python-pysocks. Use python-aiohttp-socks v0.5.5 and python-yarl v1.6.2. BonfaceKilz
2020-11-05gn: python-yarl: Add v1.6.2...* gn/packages/twint.scm (python-yarl): New package BonfaceKilz
2020-11-05gn: python-aiohttps: Add v3.7.2...* gn/packages/twint.scm (python-aiohttp-3.7.2): New package. BonfaceKilz
2020-11-05gn: python-socks: New package...* gn/packages/twint.scm (python-socks): New package. BonfaceKilz
2020-11-05gn: bh20-seq-resource: Add python-redis...* gn/packages/bioinformatics.scm [propagated-inputs]: Add python-redis since it's required for the twitter-feed. See: https://github.com/BonfaceKilz/feedanalyser/ BonfaceKilz
2020-11-05gn: python-schema-salad: use python-mistune...* gn/packages/python.scm [propagated-inputs]: Replace python-mistune-2.0.0a5 with python-mistune. This is required in order to build bh20-seq-resource successfully. BonfaceKilz
2020-11-04gn: python3-genenetwork2: Rename inputBonfaceKilz
2020-11-03gn: python3-genenetwork2: Add python-beautifulsoup4...* gn/packages/genenetwork.scm [propagated-inputs]: New input. BonfaceKilz
2020-10-31gn: python3-genenetwork2: Add python-mistune as an input...* gn/packages/genenetwork.scm (python3-genenetwork2) [propagated-inputs]: New input. BonfaceKilz
2020-10-31gn: Add new python-mistune-2.0.0a5 packageBonfaceKilz
2020-10-31gn: Delete genenetwork3 package...* gn/packages/genenetwork.scm (genenetwork3): Delete it. The python3 version of genenetwork2 is already packaged as python3-genenetwork2. BonfaceKilz
2020-10-27gn: python2-parallel: Remove upstreamed python2 libraryBonfaceKilz
2020-10-08gn: python3-genenetwork2: Update python-rpy2 inputBonfaceKilz
2020-10-08gn: Add new package python-rpy2-2.9...* gn/packages/python.scm (python-rpy2-2.9): Add it. Breaking changes are introduced in v3.0.0. See https://rpy2.github.io/doc/latest/html/changes.html#release-3-0-0 BonfaceKilz
2020-10-08gn: Update python2-parallel...* gn/packages/python.scm (python2-parallel): Update to v1.6.6; v1.6.4 is no longer available from the website. BonfaceKilz
2020-09-27Added python testing framework packagespjotrp
2020-09-23gn: Add python2-mysqlclient.Efraim Flashner
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