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2019-10-29gn: Add mailman.Efraim Flashner
* gn/packages/mailman.scm (mailman): Add mailman and its dependants
2019-10-29gn: Add gitea and service.Efraim Flashner
* gn/packages/gitea.scm (gita): New variable. * gn/services/gitea-container.scm: New container. * gn/services/gitea.service: Add systemd service.
2019-10-28gn: rust-qtlreaper: Disable tests.Efraim Flashner
* gn/packages/genenetwork.scm (rust-qtlreaper)[arguments]: Disable tests. Add custom phase to update the expected test results with the new library versions.
2019-10-27gn: Adjust to upstream crate changes.Efraim Flashner
* gn/packages/crates-io.scm: Remove upstreamed crates. * gn/packages/genenetwork.scm (rust-qtlreaper)[arguments]: Update cargo-development-inputs. Remove custom 'update-test-data phase to munge test data.
2019-10-27gn: unbreak guix-pull.Efraim Flashner
* gn/services/bnw-container.scm: Add 'define-module' to the head of file.
2019-10-25gn: Add service files for bnwEfraim Flashner
2019-10-25gn: bnw: Update to 1.22-3.eb6b002.Efraim Flashner
* gn/packages/bnw.scm (bnw): Update to 1.22-3.eb6b002. Serve from bnw-test first.
2019-10-25gn: bnw: Unconditionally browse from the local directory.Efraim Flashner
* gn/packages/bnw.scm (bnw)[arguments]: Add to custom 'patch-source phase a workaround to always browse the website from the originating url.
2019-10-24gn: Update bnw to 1.22-2.eb6b002.Efraim Flashner
* gn/packages/bnw.scm (bnw)[arguments]: Patch more files. [inputs]: Add python2-plotly-3.2.1.
2019-10-22gn: Add python2-plotly-3.2.1.Efraim Flashner
* gn/packages/python.scm (python2-plotly-3.2.1): New variable.
2019-10-22gn: python2.4: Skip another test.Efraim Flashner
* gn/packages/python24.scm (python2.4)[arguments]: Also skip the test_mhlib.py test.
2019-10-22gn: web-font-awesome: Update for upstream Guix changes.Efraim Flashner
* gn/packages/web.scm (web-font-awesome)[inherit]: New field, inherit from font-awesome. [arguments]: Rewrite for build-system and upstream changes. [version, source, build-system, native-inputs, home-page, synopsis, description, license]: Use inherited upstream values.
2019-10-20gn: Deprecate r-shiny-gn.Efraim Flashner
* gn/packages/r-shiny.scm (r-shiny-gn, js-strftime-0.9, js-es5-shim-2): Deprecate packages.
2019-10-18fixup repo for guix pullEfraim Flashner
* gn/packages/cwl.scm: GN's python-setuptools renamed to python-setuptools-old,re-enable import. * gn/packages/genenetwork.scm (my-deploy)[inputs]: Replace search-bootstrap-binary with bootstrap-executable.
2019-10-18gn: rust-qtlreaper: Manually provide dependencies.Efraim Flashner
* gn/packages/genenetwork.scm (rust-qtlreaper)[arguments]: Manually provide all the crates needed to build the package. * gn/packages/crates.io.scm: Remove all unreferenced crates. Remove all inputs for all crates.
2019-10-16gn: bxd-power-calculator-app: Provide alternate locations for csv file.Efraim Flashner
* gn/packages/bioinformatics.scm (bxd-power-calculator-app)[inputs]: Download csv datasets file from archive.org. Also note its location in IPFS should it become necessary later.
2019-10-16gn: bxd-power-calculator-app: Bind to port 3978.Efraim Flashner
2019-10-16gn: rn6-assembly-error-app: Create launcher script.Efraim Flashner
* gn/packages/bioinformatics.scm (rn6-assembly-error-app)[arguments]: Remove some library substitutions. Fix location of png directory. Create launcher script. [inputs]: Add r-minimal. Move r-ggplot2, r-shiny ... [propagated-inputs]: ... to here. Add r.
2019-10-16gn: Add bxd-power-calculator-app.Efraim Flashner
* gn/packages/bioinformatics.scm (bxd-power-calculator-app): New variable.
2019-10-10Merge remote-tracking branch 'origin/core-updates'Efraim Flashner
2019-10-07gn: Update and add some cratesEfraim Flashner
2019-10-07gn: Update some crates.Efraim Flashner
2019-10-06gn: rust-qtlreaper: Update test results.core-updatesEfraim Flashner
* gn/packages/genenetwork.scm (rust-qtlreaper)[arguments]: Add custom phase to update the expected test results with the new library versions.
2019-10-06gn: bnw: Build with gcc-5.Efraim Flashner
* gn/packages/bnw.scm (bnw)[native-inputs]: Add gcc-5.
2019-10-06gn: python2.4: Update for core-updates merge.Efraim Flashner
* gn/packages/python24.scm (python2.4)[arguments]: Update custom 'create-setup-local phase with new inputs. Add custom 'patch-rpc-location and 'skip-crypt-module phases. Skip more tests in custom 'delete-failing-tests phase. Remove inherited make-flags. [inputs]: Add libnsl, libtirpc, openssl-1.0. Remove openssl. [properties]: Remove field.
2019-10-04gnu: octave@3.4.3: Build with gcc-5.Efraim Flashner
This is in preparation of the core-updates merge, with the default GCC switching to gcc-7. * gn/packages/maths.scm (octave@3.4.3)[native-inputs]: Add gcc-5.
2019-10-04gn: octave@3.4.3: Use gnulib package.Efraim Flashner
* gn/packages/maths.scm (octave-3.4.3)[arguments]: Add new phase, get 'fseeko.c' from gnulib package. [native-inputs]: Remove 'fseeko.c', add gnulib.
2019-10-04gn: Add gnulib.Efraim Flashner
* gn/packages/gnulib.scm (gnulib): New variable
2019-10-02gn: Add javascript-jquery-ui, js-jquery-ui.Efraim Flashner
* gn/packages/javascript.scm (javascript-jquery-ui, js-jquery-ui): New variables.
2019-09-29gn: Add javascript-j3-tip.Efraim Flashner
* gn/packages/javascript.scm (javascript-d3-tip): New variable.
2019-09-29gn: Add javascript-md5, js-md5.Efraim Flashner
* gn/packages/javascript.scm (javascript-md5, js-md5): New variables.
2019-09-29gn: Add javascript-typeahead, js-typeahead.Efraim Flashner
* gn/packages/javascript.scm (javascript-typeahead, js-typeahead): New variables.
2019-09-29gn: Fixup more cratesEfraim Flashner
2019-09-29gn: rn6-assembly-error-app: Update to 0.12.Efraim Flashner
* gn/packages/bioinformatics.scm (rn6-assembly-error-app): Update to 0.12. [license]: Update license.
2019-09-26gn: Add javascript-plotly.Efraim Flashner
* gn/packages/javascript.scm (javascript-plotly): New variable.
2019-09-26gn: Add javascript-parsley, js-parsley.Efraim Flashner
* gn/packages/javascript.scm (javascript-parsley, js-parsley): New variables.
2019-09-26gn: Add javascript-ckeditor.Efraim Flashner
* gn/packages/javascript.scm (javascript-ckeditor): New variable.
2019-09-26gn: web-bootstrap-3: Fix font references.Efraim Flashner
* gn/packages/web.scm (web-bootstrap-3)[arguments]: Hardcode location of font directory. (web-bootstrap-3.3)[inherit]: Inherit from web-bootstrap-3.
2019-09-26gn: Add rn6-assembly-error-app.Efraim Flashner
* gn/packages/bioinformatics.scm (rn6-assembly-error-app): New variable.
2019-09-26gn: Fixup more cratesEfraim Flashner
2019-09-25gn: Fixup more crates.Efraim Flashner
2019-09-23gn: Add javascript-jstat, js-jstat.Efraim Flashner
* gn/packages/javascript.scm (javascript-jstat, js-jstat): New variables.
2019-09-23gn: Add javascript-jscolor, js-jscolor.Efraim Flashner
* gn/pakcages/javascript.scm (javascript-jscolor, js-jscolor): New variables.
2019-09-23gn: Add javascript-chroma, js-chroma.Efraim Flashner
* gn/packages/javascript.scm (javascript-chroma, js-chroma): New variables.
2019-09-23gn: Add javascript-nouislider, js-nouislider.Efraim Flashner
* gn/packages/javascript.scm (javascript-nouislider, js-nouislider): New variables.
2019-09-23gn: genenetwork2: Use packaged javascript-colorbox.Efraim Flashner
* gn/packages/genenetwork.scm (genenetwork2)[inputs]: Add javascript-colorbox's source. [arguments]: Replace vendored javascript-colorbox with our own.
2019-09-22gn: Add javascript-colorbox, js-colorbox.Efraim Flashner
* gn/packages/javascript.scm (javascript-colorbox, js-colorbox): New variables.
2019-09-22gn: Add javascript-smart-time-ago, js-smart-time-ago.Efraim Flashner
* gn/packages/javascript.scm (javascript-smart-time-ago, js-smart-time-ago): New variables.
2019-09-22gn: Add js-underscore.Efraim Flashner
* gn/packages/javascript.scm (js-underscore): New variable.
2019-09-22gn: Add javascript-underscore.Efraim Flashner
* gn/packages/javascript.scm (javascript-underscore): New variable.
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