| Age | Commit message (Collapse) | Author | |
|---|---|---|---|
| 2022-03-01 | cl-qc: update to eaa5d | jgart | |
| 2022-03-01 | packages: lisp: add cl-qc | jgart | |
| 2022-02-27 | gn: Add willowmap | Efraim Flashner | |
| 2022-02-18 | gn: genenetwork2: Update to 3.11-2.17652b1. | Arun Isaac | |
| * gn/packages/genenetwork.scm (genenetwork2): Update to 3.11-2.17652b1. [arguments]: Restore the default install phase. | |||
| 2022-02-18 | gn: genenetwork3: List propagated inputs in plain list. | Arun Isaac | |
| Guix now prefers inputs as a plain list instead of an association list. Modernize. * gn/packages/genenetwork.scm (genenetwork3)[propagated-inputs]: Use plain list instead of association list. | |||
| 2022-02-18 | gn: genenetwork3: Remove implicit inputs. | Arun Isaac | |
| coreutils and diffutils are implicit inputs of the python-build-system. They don't have to be included explicitly. * gn/packages/genenetwork.scm (genenetwork3)[propagated-inputs]: Remove coreutils and diffutils. | |||
| 2022-02-18 | gn: genenetwork3: Update to 0.1.0-2.83a7aa7. | Arun Isaac | |
| * gn/packages/genenetwork.scm (genenetwork3): Update to 0.1.0-2.83a7aa7. [arguments]: Enable tests. | |||
| 2022-02-18 | gn: genenetwork3: Move test inputs to native inputs. | Arun Isaac | |
| Test inputs are not required to actually run the built program. They should therefore be in native-inputs. They should not be propagated. * gn/packages/genenetwork.scm (genenetwork3)[propagated-inputs]: Move python-mypy, python-mypy-extensions, python-pylint, python-hypothesis and python-pytest to ... [native-inputs]: ... here. | |||
| 2022-02-14 | Add pytest and hypothesis for automated testing | Frederick Muriuki Muriithi | |
| In the effort to improve automated testing, this commit adds two python modules that are useful for the tests. | |||
| 2022-02-14 | gn: Upstream 2 julia packages | Efraim Flashner | |
| 2022-02-09 | gn: genenetwork2: Add python-ijson. | Alexander Kabui | |
| * gn/packages/genenetwork.scm (genenetwork2)[propagated-inputs]: Add python-ijson. Signed-off-by: Arun Isaac <arunisaac@systemreboot.net> | |||
| 2022-02-09 | gn: genenetwork3: Add r-ctl. | Alexander Kabui | |
| * gn/packages/genenetwork.scm (genenetwork3)[propagated-inputs]: Add r-ctl. Signed-off-by: Arun Isaac <arunisaac@systemreboot.net> | |||
| 2022-02-05 | gn: tissue: Add guile to inputs. | Arun Isaac | |
| * gn/packages/gemini.scm (tissue)[inputs]: Add guile-3.0. | |||
| 2022-02-05 | gn: Add tissue. | Arun Isaac | |
| * gn/packages/gemini.scm (tissue): New variable. | |||
| 2022-02-04 | remove upstreamed cl-css-lite | jgart | |
| 2022-02-04 | gn: packages: lisp: remove upstreamed cl-snakes | jgart | |
| 2022-02-02 | gn: packages: lisp: add cl-css-lite | jgart | |
| 2022-01-31 | gn: julia package updates | Efraim Flashner | |
| 2022-01-27 | gn: julia: Prepare packages for upstreaming | Efraim Flashner | |
| 2022-01-27 | julia package cleanup | Efraim Flashner | |
| 2022-01-27 | gn: packages: emacs-xyz: add emacs-trident-mode. | jgart | |
| 2022-01-26 | add notebook-tools | jgart | |
| 2022-01-26 | add jrep | jgart | |
| 2022-01-26 | gn: packages: crates-io: add rust-clap-for-jrep | jgart | |
| 2022-01-26 | gn: packages: quality-control: remove utf-8-lineseparator | jgart | |
| * upstreamed to GNU Guix | |||
| 2022-01-26 | gn: genenetwork: Disable tests on python-seaborn. | Arun Isaac | |
| * gn/packages/genenetwork.scm (python-seaborn-without-tests, python-pingouin-with-working-python-seaborn): New variables. (genenetwork3)[propagated-inputs]: Replace python-pingouin with python-pingouin-with-working-python-seaborn. | |||
| 2022-01-26 | gn: packages: lisp: Add cl-scribble. | jgart | |
| 2022-01-26 | gn: packages: lisp: Add cl-meta. | jgart | |
| 2022-01-26 | gn: packages: lisp: Add cl-fare-memoization. | jgart | |
| 2022-01-26 | gn: packages: lisp: Add cl-lorem-ipsum. | jgart | |
| 2022-01-26 | gn: packages: lisp: Add sbcl-fwoar-lisputils. | jgart | |
| 2022-01-26 | gn: packages: lisp: Add cl-2am. | jgart | |
| 2022-01-26 | gn: packages: lisp: Add cl-defstar. | jgart | |
| 2022-01-26 | gn: packages: Add cl-snakes. | jgart | |
| 2022-01-26 | gn: packages: lisp: Add sbcl-rollbar. | jgart | |
| 2022-01-26 | gn: packages: utf-8-lineseparator: Don't use tag name in version field. | jgart | |
| 2022-01-25 | gn: Fix failing python-twint build. | BonfaceKilz | |
| * gn/packages/twint.scm (python-aiohttp-3.7.2): Delete it. (python-aiohttp-socks-0.5.5): Delete it. (python-yarl-1.6.2): Delete it. (python-twint) [propagated-inputs]: Replace python-aiohttp-socks-0.5.5 with python-aiohttp-socks and python-yarl-1.6.2 with python-yarl. | |||
| 2022-01-24 | gn: quality-control: add libcsv | jgart | |
| 2022-01-24 | gn: utf-8-lineseparator: Update to cj7. | jgart | |
| 2022-01-23 | gn: Add verkko. | Efraim Flashner | |
| 2022-01-23 | gn: graphaligner: Fix building and update to 1.0.14 | Efraim Flashner | |
| 2022-01-22 | gn: gemma-wrapper: added coreutils and note on testing | pjotrp | |
| 2022-01-22 | gn: gemma-wrapper: updated to 0.99.6 | pjotrp | |
| 2022-01-22 | gn: gemma-wrapper: updated to 0.99.6 | pjotrp | |
| 2022-01-13 | gn: quality-control: Add utf-8-lineseparator. | jgart | |
| * gn/packages/quality-control.scm: New file. | |||
| 2022-01-09 | gn: Remove upstreamed node packages | Efraim Flashner | |
| 2022-01-09 | gn: Unconditionally use current rust package. | Efraim Flashner | |
| 2022-01-09 | gn: check for new releases of gitea | Efraim Flashner | |
| 2022-01-06 | gn: genenetwork: Add diffutils | BonfaceKilz | |
| * gn/packages/genenetwork.scm (genenetwork3)[propagated-inputs]: Add diffutils. | |||
| 2022-01-05 | Revert "gn: genenetwork: Add pudb" | BonfaceKilz | |
| This reverts commit f7e876d53832cf1d5d4b19118266e910e6100ea9. Add an extra dependency by running something like: ``` guix shell -L /home/bonface/projects/guix-bioinformatics \ -L /home/bonface/projects/guix-past/modules -C \ -D pudb -f guix.scm ``` | |||
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