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2024-02-23gn: Add seqlib.Arun Isaac
* gn/packages/bioinformatics.scm (seqlib): New variable.
2024-02-23gn: Add r-rrbgen.Arun Isaac
* gn/packages/bioinformatics.scm (r-rrbgen): New variable.
2024-02-22gn: Add ocaml4.07-gsl-1.Arun Isaac
ocaml4.07-gsl-1 has been removed from upstream Guix. * gn/packages/ocaml.scm (ocaml4.07-gsl-1): New variable.
2024-02-15Bump down font-awesome to v4.7.0.Munyoki Kilyungi
* gn/packages/javascript.scm (javascript-font-awesome): Update to v4.7.0 which is the exact version we use in the genenetwork website. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2024-02-15gn: javascript: Add javascript-uikit.Alexander_Kabui
* gn/packages/javascript.scm: (javascript-uikit): New package. * gn/packages/javascript.scm: (genenetwork2) [propagated-inputs]:Add javascript-uikit.
2024-02-01gn: Update javascript-ckeditor.Munyoki Kilyungi
* gn/packages/javascript.scm (javascript-ckeditor): Copy entire directory structure of ckeditor to the store. ckeditor.js requires some CSS and other js files in the unzipped source to be able to be fully functional. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2024-01-03gnqc-py: Fix syntax error.Frederick Muriuki Muriithi
2024-01-03gn: genenetwork2: Update to 3.11-4.c1d377e.Arun Isaac
* gn/packages/genenetwork.scm (genenetwork2): Update to 3.11-4.c1d377e.
2024-01-03gn: genenetwork3: Update to 0.1.0-5.6bb4a5f.Arun Isaac
* gn/packages/genenetwork.scm (genenetwork3): Update to 0.1.0-5.6bb4a5f.
2024-01-02gn: genenetwork2: Fix path to installed bundled fonts.Arun Isaac
2024-01-02gn: genenetwork2: Install bundled fonts.Arun Isaac
* gn/packages/genenetwork.scm (genenetwork2)[arguments]: Add install-bundled-fonts and fix-font-paths phases.
2024-01-02gn: genenetwork2: Use G-expressions.Arun Isaac
* gn/packages/genenetwork.scm (genenetwork2): Use G-expressions.
2024-01-02Remove genenetwork3 return.Arun Isaac
This was introduced accidentally in 7a4bf91e019fe084f92a90535cbfffb7c119b9a7. * gn/packages/genenetwork.scm: Remove genenetwork3 return.
2024-01-02gn: genenetwork2: Update to 3.11-3.ff67963.Arun Isaac
* gn/packages/genenetwork.scm (genenetwork2): Update to 3.11-3.ff67963.
2024-01-02gn: genenetwork2: Substitute new path to default_settings.py.Arun Isaac
2024-01-02gnqc-py: New packageFrederick Muriuki Muriithi
2023-12-29gn: genenetwork3: Update to 0.1.0-4.093163e.Arun Isaac
2023-12-29Ruby lmdb builds for ruby 2.7. We are not going to use it thoughpjotrp
2023-12-05gn-auth: add flask-cors dependency.Frederick Muriuki Muriithi
2023-12-05gn-auth: Remove bcrypt dependencyFrederick Muriuki Muriithi
2023-12-01roll-back on lizardfs because fuse3 issuespjotrp
2023-11-16Updated lizardfs to latest version on git.pjotrp
* gn/packages/file-systems.scm (lizardfs)[arguments]: updated and disabled tests in CMake
2023-11-13gn: javascript: Add javascript-aceAlexander_Kabui
* gn/packages/javascript.scm (javascript-ace): New package. Reviewed-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2023-11-10gn: javascript: Add javascript-marked-highlight.Alexander_Kabui
* gn/packages/javascript.scm (javascript-marked-highlight): New package. Reviewed-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2023-11-10gn: javascript: Add javascript-marked.Alexander_Kabui
* gn/packages/javascript.scm (javascript-marked): New package. Reviewed-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2023-11-08gn: lizardfs: Fix building.Efraim Flashner
* gn/packages/file-systems.scm (lizardfs)[source]: Add patch. [arguments]: Remove trailing #t from phases. [inputs]: Remove labels. Use fuse-2. * lizardfs-issues-found-on-Fedora-34-using-GCC-11.patch: New file.
2023-11-03gn: javascript: Copy the right htmx.min.js from the source.Munyoki Kilyungi
* gn/packages/javascript.scm (javascript-htmx): Copy "/dist/htmx.min.js" to the targetdir. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2023-10-27Update dependencies: genenetwork3 and gn-authFrederick Muriuki Muriithi
* genenetwork3: Remove `yoyo-migrations` as a dependency * gn-auth: Use the upstream `yoyo-migrations` * Remove temporary local definition for yoyo-migrations.
2023-10-26gn: htmx: Replace minify with trivial build system.Munyoki Kilyungi
Esbuild system has no support for ES5 and will lead to a build failure with the following output: `dist/htmx.js:1979:20: error: Transforming let to the configured target environment ("es5") is not supported yet` Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2023-10-19Remove python-arvados-python-client.Arun Isaac
The package is broken, some of its inputs have been removed from upstream Guix, and we no longer need this package. Restore it later if necessary. * gn/packages/python.scm (python-arvados-python-client): Delete variable.
2023-10-19Remove bh20-seq-resource.Arun Isaac
The package is broken, some of its inputs have been removed from upstream Guix, and we no longer need this package. * gn/packages/bioinformatics.scm (bh20-seq-resource): Delete variable. * gn/services/bh20-seq-resource-container.scm: Delete file.
2023-10-06genenetwork3: Add python-pyld to propagated-inputs.Munyoki Kilyungi
* gn/packages/genenetwork.scm (genenetwork3)[propagated-inputs]: Add python-ld. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2023-10-04gn: javascript: Replace htmx.min.js with htmx.js.Munyoki Kilyungi
* gn/packages/javascript.scm (javascript-htmx) [arguments]: Replace "dist/htmx.min.js" with "dist/htmx.js" since we already are using the minify-build-system. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2023-09-27gn-auth: Fix missing importFrederick Muriuki Muriithi
2023-09-27gn-auth: List packages to installFrederick Muriuki Muriithi
List all packages to install to hopefully fix failure in `sanity-check` phase.
2023-09-27gn-auth: Use newer setup.pyFrederick Muriuki Muriithi
Use updated setup.py to try and fix issues with the `sanity-check` phase.
2023-09-27gn-auth: Use upstream python-mypyFrederick Muriuki Muriithi
2023-09-27gn-auth: Update commit and hashFrederick Muriuki Muriithi
* Update the commit hash and the hash of the files after updating the guix-bioinformatics channel configurations for the gn-auth channel.
2023-09-27gn-auth: Update commit and hash.Frederick Muriuki Muriithi
2023-09-26pggb: Add missing inputsEfraim Flashner
2023-09-26pggb: wrap with more packagesEfraim Flashner
2023-09-26gsl: Provide glibc-hwcaps version.Efraim Flashner
2023-09-26vg: Update package definitionEfraim Flashner
2023-09-26seqwish: Provide glibc-hwcaps versionEfraim Flashner
2023-09-26seqwish: Build and link against shared library.Efraim Flashner
2023-09-25seqwish: Make package tunable.Efraim Flashner
2023-09-25vg: Link with some shared libraries.Efraim Flashner
2023-09-25Delete python-mypy-0.981.Munyoki Kilyungi
* gn/packages/python.scm (python-mypy-0.981): Delete it. * gn/packages/genenetwork.scm (genenetwork3)[native-inputs]: Replace python-mypy-0.981 with upstream's python-mypy. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2023-09-24pggb: Fix typo.Efraim Flashner
2023-09-24pggb: Provide version with glibc-hwcaps.Efraim Flashner
generated by cgit v1.2.3 (git 2.44.0) at 2024-11-01 18:25:34 +0000