Age | Commit message (Collapse) | Author |
|
* gn/packages/statistics.scm (r-ctl): Update to 1.0.0-2.
|
|
|
|
|
|
* gn/packages/genenetwork.scm (rust-qtlreaper): Update to 0.1.4.
[arguments]: Add rust-ndarray to cargo-inputs.
* gn/packages/crates-io.scm: Add many new crates.
|
|
|
|
|
|
* gn/packages/bioinformatics.scm (edirect-gn)[supported-systems]:
Replace atom with list.
|
|
* gn/packages/bioinformatics.scm (edirect-gn)[native-search-paths]: New
field.
|
|
* gn/packages/bioinformatics.scm (edirect-gn)[arguments]: Install
missing 'efetch' binary. Sort installed files alphabetically. Substitute
call to 'exec perl' for all potentially affected files.
|
|
|
|
* gn/packages/hyphy.scm (hyphy): Update to 2.5.0.
[source]: Download using 'git-fetch'.
[inputs]: Add curl, openssl.
[arguments]: Add test-target.
|
|
|
|
|
|
|
|
|
|
* gn/packages/openfyba.scm (openfyba)[source]: Don't use unstable
tarball.
[arguments]: Use 'boostrap phase to replace 'boostrap phase. Adjust for
change in source.
|
|
|
|
* gn/packages/arrayfire.scm (clFFT): Update to 2.12.2.
|
|
|
|
* gn/packages/bioinformatics.scm (varscan)[arguments]: Disable tests.
Update all custom phases.
[home-page]: Use https.
[description]: Add it.
|
|
|
|
|
|
* gn/packages/bioinformatics.scm (contra)[source]: Add snippet to remove
bundled sources.
|
|
* gn/packages/bioinformatics.scm (contra)[arguments]: Update custom
'install phase.
|
|
* gn/packages/bioinformatics.scm (contra)[source]: Update to new folder
structure.
|
|
* gn/packages/bioinformatics.scm (pindel)[arguments]: Use 'invoke' when
possible. Parameterize custom 'check phase.
|
|
* gn/packages/bioinformatics.scm (pindel)[source]: Download using
'git-fetch'.
|
|
* gn/packages/bioinformatics.scm (edirect-11): New variable.
|
|
* gn/packages/ratspub.scm (ratspub): New variable.
|
|
* gn/packages/genenetwork.scm (rust-qtlreaper)[arguments]: Remove custom
phases.
|
|
* gn/packages/bnw.scm (bnw)[build-system]: Use gnu-build-system.
[arguments]: Adjust accordingly.
[native-inputs]: Remove source.
[inputs]: Remove bash-minimal, add rmath-standalone.
|
|
|
|
|
|
* gn/packages/python.scm (python-shellescape): Re-indent.
[source]: Use pypi uri.
[inputs]: Move python-setuptools ...
[native-inputs]: ... to here.
[license]: Use 'license' prefix.
|
|
* gn/packages/python.scm (python-subprocess32): Re-indent.
[version]: Correct to 3.5.3, which is what the source was downloading.
[source]: Use pypi uri.
|
|
* gn/packages/python.scm (python-typing-extensions): Re-indent.
[source]: Use pypi uri.
|
|
* gn/packages/python.scm (python-bagit)[source]: Use pypi uri.
[synopsis, description]: Update.
|
|
* gn/packages/genenetwork.scm (rust-qtlreaper): New variable.
* gn/packages/crates-io.scm (~300 packages): New variables.
|
|
* gn/packages/bnw.scm (bnw)[inputs]: Add web-jquery, web-font-awesome,
javascript-cytoscape, javascript-cytoscape-2, javascript-dagre,
javascript-lodash, javascript-cytoscape-dagre,
javascript-cytoscape-panzoom, javascript-d3js-4, javascript-d3js-multi,
javascript-canvas-toblob, javascript-filesaver.
[arguments]: Add references to new inputs.
|
|
* gn/packages/javascript.scm (javascript-filesaver): New variable.
|
|
* gn/packages/javascript.scm (javascript-canvas-toblob): New variable.
|
|
* gn/packages/javascript.scm (javascript-d3js-multi): New variable.
|
|
* gn/packages/javascript.scm (javascript-d3js-4): New variable.
|
|
* gn/packages/javascript.scm (javascript-d3js): New variable.
|
|
* gn/packages/javascrpt.scm (javascript-lodash): New variable.
|
|
* gn/packages/web.scm (font-awesome): New variable.
|
|
* gn/packages/javascript.scm (javascript-cytoscape-dagre): New variable.
|
|
* gn/packages/javascript.scm (javascript-dagre): New variable.
|
|
* gn/packages/bnw.scm (bnw): Add substitute* to patch '/usr/bin/dot'
calls with store graphviz references.
|
|
* gn/packages/web.scm (javascript-cytoscape-popper): New variable.
|