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2022-08-15gn: genenetwork3: Update to 0.1.0-2.6db3b2a....* gn/packages/crates-io.scm (genenetwork3) Update to 0.1.0-2.6db3b2a. Frederick Muriuki Muriithi
2022-08-15gn: gn-rust-correlation: Update to 0.1.4-0.09c579f....* gn/packages/crates-io.scm (gn-rust-correlation) Update to 0.1.4-0.09c579f. Frederick Muriuki Muriithi
2022-08-08gn: gn-rust-correlation: Update to 0.1.4-0.3492daa....* gn/packages/crates-io.scm (gn-rust-correlation) Update to 0.1.4-0.3492daa. Frederick Muriuki Muriithi
2022-08-04gn: javascript-jquery-ui: Update to 1.13.2...* gn/packages/javascript.scm (javascript-jquery-ui): Update to 1.13.2. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Alexander_Kabui
2022-08-03gn: javascript-jquery-ui: Remove duplicate package....javascript-jquery-ui@1.9.1 is packaged twice * gn/packages/javascript.scm (javascript-jquery-ui): Delete duplicate package. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Alexander_Kabui
2022-08-02gn: genenetwork2: Update to 3.11-2.85ad783....* gn/packages/genenetwork.scm (genenetwork2): Update to 3.11-2.85ad783. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Frederick Muriuki Muriithi
2022-07-29gn: genenetwork3: Update it...* gn/packages/genenetwork.scm (commit): Update it. (source): Update hash. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Frederick Muriuki Muriithi
2022-07-29gn: busco: Update to 5.4.1.Efraim Flashner
2022-07-29gnu: pplacer: Fix building....* gn/packages/ocaml.scm (ocaml4.07-lwt-5.5.0): New variable. (build-with-ocaml4.07): New procedure. * gn/packages/bioinformatics.scm (pplacer): Wrap with build-with-ocaml4.07. Efraim Flashner
2022-07-29gn: Add r-bracerEfraim Flashner
2022-07-22gn: Update gn-rust-correlation...* gn/packages/crates-io.scm (commit): Update it. (source): Update hash. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Alexander_Kabui
2022-07-22gn: genenetwork2: Add gn-rust-correlation....* gn/packages/genenetwork.scm: (genenetwork2) [propagated-inputs]: Add gn-rust-correlations. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Alexander_Kabui
2022-07-11gn: tissue: Update to 0.1.0-3.6d6285d....* gn/packages/gemini.scm (tissue): Update to 0.1.0-3.6d6285d. [inputs]: Add guile-filesystem. Arun Isaac
2022-07-01gn: tissue: Update to 0.1.0-2.b15edb1....* gn/packages/gemini.scm (tissue): Update to 0.1.0-2.b15edb1. Arun Isaac
2022-06-30gn: tissue: Update to 0.1.0-1.fd6668c....* gn/packages/gemini.scm (tissue): Update to 0.1.0-1.fd6668c. Arun Isaac
2022-06-29gn: genenetwork3: Add gn-rust-correlation....* gn/packages/genenetwork.scm: Import module crates-io. (genenetwork3) [propagated-inputs]: Add gn-rust-correlations. BonfaceKilz
2022-06-29gn: Add gn-rust-correlation....* gn/packages/crates-io.scm (gn-rust-correlation): New variable Signed-off-by: BonfaceKilz <me@bonfacemunyoki.com> Alexander_Kabui
2022-06-29gn: Add rust-gsl....* gn/packages/crates-io.scm (rust-gsl): New variable. Signed-off-by: BonfaceKilz <me@bonfacemunyoki.com> Alexander_Kabui
2022-06-29gn: Add rust-gsl-sys....* gn/packages/crates-io.scm (rust-gsl-sys): New variable. Signed-off-by: BonfaceKilz <me@bonfacemunyoki.com> Alexander_Kabui
2022-06-29gn: tissue: Update to 0.1.0-0.2866d0c....* gn/packages/gemini.scm (tissue): Update to 0.1.0-0.2866d0c. Arun Isaac
2022-06-29gn: tissue: Update to 0.1.0-0.2ef55e6....* gn/packages/gemini.scm (tissue): Update to 0.1.0-0.2ef55e6. Arun Isaac
2022-06-29gn: gitea: Update to 1.15.11.Efraim Flashner
2022-06-29gn: tissue: Update to 0.1.0-0.983fc85....* gn/packages/gemini.scm: Do not import (gnu packages version-control). Import (gnu packages guile-xyz) and (guix gexp). (tissue): Update to 0.1.0-0.983fc85. Arun Isaac
2022-06-21gn: genenetwork2: Update it...* gn/packages/genenetwork.scm (commit): Update it. (source): Update hash. BonfaceKilz
2022-06-21gn: Update genenetwork3...* gn/packages/genenetwork.scm (commit): Update it. (source): Update hash. (propagated-inputs): Remove python-ipfshttpclient. BonfaceKilz
2022-06-21gn: Add quast.Efraim Flashner
2022-06-21gn: metaeuk: Fix building package.Efraim Flashner
2022-06-14gn: genenetwork3: Use upstream python-pingouin....* gn/packages/genenetwork.scm (python-seaborn-without-tests, python-pingouin-with-working-python-seaborn): Delete variables. (genenetwork3)[propagated-inputs]: Replace python-pingouin-with-working-python-seaborn with upstream python-pingouin. Arun Isaac
2022-06-10gn: Update genenetwork3...* gn/packages/genenetwork.scm (commit): Update it. (source): Update hash. (propagated-inputs): Add python-lmdb. BonfaceKilz
2022-06-07gn: hap.py: Add previously missing inputs.Efraim Flashner
2022-06-07gn: Fix building python2-bx-python.Efraim Flashner
2022-06-07gn: pplacer-scripts: Update argument field.Efraim Flashner
2022-06-07gn: python2-biopython: Fix building package.Efraim Flashner
2022-06-07gn: Fix building python2-rpy2.Efraim Flashner
2022-06-07gn: Hide inputs which have been dropped by Guix.Efraim Flashner
2022-06-07gn: Add missing module importsEfraim Flashner
2022-06-07gn: cleanup yaj importsEfraim Flashner
2022-06-01gn: Add python2-biopython....python2-biopython has been removed from Guix upstream. * gn/packages/bioinformatics.scm (python2-biopython): New variable. Arun Isaac
2022-06-01gn: bioinformatics: Import (gnu packages ocaml)....* gn/packages/bioinformatics.scm: Import (gnu packages ocaml) required by dependencies of pplacer. Arun Isaac
2022-06-01gnu: Add pplacer....pplacer and pplacer-scripts have been removed from Guix upstream. * gn/packages/bioinformatics.scm (pplacer, pplacer-scripts): New variables. Arun Isaac
2022-06-01gnu: Add python-pytest-runner-2....python-pytest-runner-2 has been removed from Guix upstream. * gn/packages/bioinformatics.scm (python-pytest-runner-2): New variable. Arun Isaac
2022-06-01gn: Adjust vg for other architecturesEfraim Flashner
2022-06-01ruby-cbor upstreamedEfraim Flashner
2022-05-24New dependency: (genenetwork3: diffutils)...- Genenetwork3 depends on diffutils Frederick Muriuki Muriithi
2022-05-11genenetwork-qc: Update the releaseFrederick Muriuki Muriithi
2022-05-09Add definition for genenetwork-qc...Add a package definition for the GeneNetwork Quality Control application. Frederick Muriuki Muriithi
2022-05-05services: databases: Add virtuoso maximum dirty buffers configuration....* gn/services/databases.scm (<virtuoso-configuration>)[maximum-dirty-buffers]: New field. (virtuoso-shepherd-service): Serialize maximum-dirty-buffers field. Arun Isaac
2022-05-05services: databases: Add virtuoso number of buffers configuration....* gn/services/databases.scm (<virtuoso-configuration>)[number-of-buffers]: New field. (virtuoso-shepherd-service): Serialize number-of-buffers field. Arun Isaac
2022-05-03gn: cva6: Set #:make-flags instead of overriding the build phase....* gn/packages/riscv.scm (cva6)[arguments]: Set #:make-flags instead of overriding the build phase. Arun Isaac
2022-05-03gn: cva6: Switch to upstream source instead of fork....* gn/packages/riscv.scm (cva6)[source]: Use upstream openhwgroup source instead of the cornell-brg fork. [arguments]: Add fix-stdout phase. Pass RISV=0 to make in build phase. Arun Isaac
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